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AT2G17600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G17590.1); Has 1546 Blast hits to 615 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1525; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXF7eggNOG:ENOG4110412EMBL:AC007584EMBL:CP002685
EnsemblPlants:AT2G17600EnsemblPlants:AT2G17600.1entrez:816267GeneID:816267
GO:GO:0047134Gramene:AT2G17600.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152
HOGENOM:HOG000064693InterPro:IPR004146InterPro:IPR011424KEGG:ath:AT2G17600
Pfam:PF03107Pfam:PF07649PhylomeDB:Q9SHK9PIR:B84554
Proteomes:UP000006548RefSeq:NP_179351.1SMR:Q9SHK9SUPFAM:SSF57889
TAIR:AT2G17600UniGene:At.40124UniProt:Q9SHK9
Coordinates (TAIR10) chr2:-:7654477..7656219
Molecular Weight (calculated) 67318.70 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.36
Length 580 amino acids
Sequence (TAIR10)
(BLAST)
001: MAANEEEPIC RLSHPTHSHT LSRRAGRIPP SGCFACDKEE PSPCSTFHYS CTTCDVEFHD ICHVYPRKLT HPYHLQHPLT LTTQNTEIEI ISKNPEYGYI
101: FKNCNWCGDD LRDGSQFYHC SICNFCLDLS CSQNFPTLTI TNPKSHHHSL FLFPWPLLIP CEACELVSLL EPSYTCFQCN YLVHESCINL PRVIKITRHP
201: HRLSHTPFLP PTTPSCRVCY KTVDIKYGQY SCDHEGCSYV AHSKCATHMH VWDGRELEWE PEELDETEDI VPFKKVGDNM IKYFCHEHHL KLEKYDSVRD
301: AKKQCQACIL RIDSYDFYNC VQCDFFLHEV CAGLPRKLAH ALHKHPLVLD PSPILDYSST SCSTCAREST GFRYKCSKTD CDDEITIQID FRCILVPDCF
401: THKSHEHPLF ISTSYSRKGN ISCDGCKDSV RDEYYLQCTI CSFAMCYRCA TIPYELYYKY DAHLLSLCYG EDAEKAYWCE VCEKELNPRE WFYSCNKCCI
501: TIHLECIFGS SVYIKSGYTF YFGSASMKIL GNNSHTRPIC YKCDHRCPDS VYYKLFEKVF CSWLCVWTSD IESFDNVEKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)