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AT5G39760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 23
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox protein 23 (HB23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 34 (TAIR:AT3G28920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19223eggNOG:ENOG410IW64eggNOG:ENOG410YKTXEMBL:AB016876
EMBL:AK227191EMBL:AY086395EMBL:AY091034EMBL:AY117347
EMBL:CP002688EnsemblPlants:AT5G39760EnsemblPlants:AT5G39760.1entrez:833972
Gene3D:1.10.10.60GeneID:833972Genevisible:Q9FIW9GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009739
GO:GO:0009740GO:GO:0042803GO:GO:0046872Gramene:AT5G39760.1
hmmpanther:PTHR31948hmmpanther:PTHR31948:SF8HOGENOM:HOG000238105InParanoid:Q9FIW9
IntAct:Q9FIW9InterPro:IPR006455InterPro:IPR006456InterPro:IPR009057
KEGG:ath:AT5G39760OMA:FTYKECLPaxDb:Q9FIW9Pfam:PF04770
Pfam:Q9FIW9Pfscan:PS51523PhylomeDB:Q9FIW9PRIDE:Q9FIW9
PRO:PR:Q9FIW9ProDom:PD125774PROSITE:PS51523ProteinModelPortal:Q9FIW9
Proteomes:UP000006548RefSeq:NP_568570.1SMR:Q9FIW9STRING:3702.AT5G39760.1
SUPFAM:SSF46689TAIR:AT5G39760tair10-symbols:AtHB23tair10-symbols:HB23
tair10-symbols:ZHD10TIGRfam:TIGR01565TIGRfam:TIGR01566TIGRFAMs:TIGR01565
TIGRFAMs:TIGR01566UniGene:At.9361UniProt:Q9FIW9
Coordinates (TAIR10) chr5:+:15911543..15912547
Molecular Weight (calculated) 36388.00 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.98
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDMTPTITT TTTPTPKSPE PESETPTRIQ PAKPISFSNG IIKRHHHHHH PLLFTYKECL KNHAAALGGH ALDGCGEFMP SPSSISSDPT SLKCAACGCH
101: RNFHRRDPDN NNDSSQIPPP PSTAVEYQPH HRHHPPPPPP PPPPRSPNSA SPPPISSSYM LLSLSGTNNN NNNLASFSDL NFSAGNNHHH HHQHTLHGSR
201: KRFRTKFSQF QKEKMHEFAE RVGWKMQKRD EDDVRDFCRQ IGVDKSVLKV WMHNNKNTFN RRDIAGNEIR QIDNGGGNHT PILAGEINNH NNGHHGVGGG
301: GELHQSVSSG GGGGGFDSDS GGANGGNVNG SSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)