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AT2G18350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 24
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox protein 24 (HB24); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 28 (TAIR:AT3G50890.1); Has 497 Blast hits to 465 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 497; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW0BeggNOG:ENOG410YKZ6EMBL:AC006439EMBL:AY088255
EMBL:CP002685EnsemblPlants:AT2G18350EnsemblPlants:AT2G18350.1entrez:816350
Gene3D:1.10.10.60GeneID:816350Genevisible:Q9ZPW7GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0042803
GO:GO:0046872Gramene:AT2G18350.1hmmpanther:PTHR31948HOGENOM:HOG000238105
InParanoid:Q9ZPW7IntAct:Q9ZPW7InterPro:IPR006455InterPro:IPR006456
InterPro:IPR009057KEGG:ath:AT2G18350OMA:ARYRECQPaxDb:Q9ZPW7
Pfam:PF04770Pfam:Q9ZPW7Pfscan:PS51523PhylomeDB:Q9ZPW7
PIR:C84563PRIDE:Q9ZPW7PRO:PR:Q9ZPW7ProDom:PD125774
PROSITE:PS51523ProteinModelPortal:Q9ZPW7Proteomes:UP000006548RefSeq:NP_565436.1
SMR:Q9ZPW7STRING:3702.AT2G18350.1SUPFAM:SSF46689TAIR:AT2G18350
tair10-symbols:AtHB24tair10-symbols:HB24tair10-symbols:ZHD6TIGRfam:TIGR01565
TIGRfam:TIGR01566TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.40008
UniProt:Q9ZPW7
Coordinates (TAIR10) chr2:-:7971122..7971910
Molecular Weight (calculated) 29952.20 Da
IEP (calculated) 9.22
GRAVY (calculated) -1.04
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)