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AT1G27930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF579)
Curator
Summary (TAIR10)
Function unknown. Interacts with eIF3.
Computational
Description (TAIR10)
FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G67330.1); Has 251 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
EC:2.1.1.-eggNOG:ENOG410IGPIeggNOG:ENOG410YA8EEMBL:AC069471
EMBL:AY050385EMBL:AY085189EMBL:AY124820EMBL:CP002684
EnsemblPlants:AT1G27930EnsemblPlants:AT1G27930.1entrez:839686GeneID:839686
Genevisible:Q9C7F9GO:GO:0000139GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0008168GO:GO:0016021GO:GO:0045492
Gramene:AT1G27930.1hmmpanther:PTHR31444hmmpanther:PTHR31444:SF1HOGENOM:HOG000238795
InterPro:IPR006514InterPro:IPR021148KEGG:ath:AT1G27930OMA:HDSPLWH
PaxDb:Q9C7F9Pfam:PF04669PhylomeDB:Q9C7F9PIR:F86404
Proteomes:UP000006548RefSeq:NP_564297.1TAIR:AT1G27930TIGRfam:TIGR01627
TIGRFAMs:TIGR01627TMHMM:TMhelixUniGene:At.24903UniProt:Q9C7F9
Coordinates (TAIR10) chr1:-:9731510..9732379
Molecular Weight (calculated) 32358.10 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.07
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTLIPSEKR WIITGVLLAG LVGGALLFTS FIRAADETLF LCSTASAKSR AVAAAADYEA TPIQLQAIVH YATSNVVPQQ NLAEISISFN ILKKLAPANF
101: LVFGLGRDSL MWASLNPRGK TLFLEEDLEW FQKVTKDSPF LRAHHVRYRT QLQQADSLLR SYKTEPKCFP AKSYLRGNEK CKLALTGLPD EFYDTEWDLL
201: MVDAPKGYFA EAPGRMAAIF SAAVMARNRK KPGVTHVFLH DVNRRVEKTF AEEFLCRKYR VNAAGRLWHF AIPPAAANAT IDSGDYRFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)