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AT2G46170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.555
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; INVOLVED IN: response to karrikin; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1230 Blast hits to 1228 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 7; Plants - 492; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AC005397EMBL:AY053421
EMBL:AY074836EMBL:CP002685EnsemblPlants:AT2G46170EnsemblPlants:AT2G46170.1
entrez:819224ExpressionAtlas:O82352GeneID:819224Genevisible:O82352
GO:GO:0005783GO:GO:0005789GO:GO:0005886GO:GO:0016021
GO:GO:0080167hmmpanther:PTHR10994hmmpanther:PTHR10994:SF89HOGENOM:HOG000237479
InParanoid:O82352InterPro:IPR003388iPTMnet:O82352OMA:SEKIHHH
PaxDb:O82352Pfam:O82352Pfam:PF02453Pfscan:PS50845
PhylomeDB:O82352PIR:E84899PRIDE:O82352PRO:PR:O82352
PROSITE:PS50845ProteinModelPortal:O82352Proteomes:UP000006548RefSeq:NP_566065.1
SMR:O82352STRING:3702.AT2G46170.1TAIR:AT2G46170TMHMM:TMhelix
UniGene:At.13080UniProt:O82352
Coordinates (TAIR10) chr2:+:18965410..18966940
Molecular Weight (calculated) 28689.30 Da
IEP (calculated) 7.78
GRAVY (calculated) 0.16
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)