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AT1G71100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribose 5-phosphate isomerase, type A protein
Curator
Summary (TAIR10)
Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.
Computational
Description (TAIR10)
RADIAL SWELLING 10 (RSW10); FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: uridine biosynthetic process, response to karrikin, cellulose biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1); Has 5045 Blast hits to 5045 proteins in 1956 species: Archae - 235; Bacteria - 3584; Metazoa - 111; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 829 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G71100-MONOMEREC:5.3.1.6eggNOG:COG0120eggNOG:KOG3075
EMBL:AC016972EMBL:AF360330EMBL:AY087060EMBL:AY142637
EMBL:CP002684EnsemblPlants:AT1G71100EnsemblPlants:AT1G71100.1entrez:843450
GeneID:843450Genevisible:Q9C998GO:GO:0004751GO:GO:0005737
GO:GO:0005829GO:GO:0009052GO:GO:0030244GO:GO:0046109
GO:GO:0080167Gramene:AT1G71100.1gramene_pathway:5.3.1.6gramene_pathway:CALVIN-PWY
gramene_pathway:NONOXIPENT-PWYgramene_pathway:PWY-5723gramene_pathway:RIBOKIN2-PWYHAMAP:MF_00170
hmmpanther:PTHR11934hmmpanther:PTHR11934:SF7HOGENOM:HOG000276369InParanoid:Q9C998
InterPro:IPR004788InterPro:IPR020672KEGG:00030+5.3.1.6KEGG:00051+5.3.1.6
KEGG:00710+5.3.1.6KEGG:ath:AT1G71100KO:K01807OMA:CNGMENG
PANTHER:PTHR11934PaxDb:Q9C998Pfam:PF06026Pfam:Q9C998
PhylomeDB:Q9C998PIR:E96735PRIDE:Q9C998PRO:PR:Q9C998
ProteinModelPortal:Q9C998Proteomes:UP000006548Reactome:R-ATH-71336RefSeq:NP_177266.1
SMR:Q9C998STRING:3702.AT1G71100.1SUPFAM:SSF100950SUPFAM:SSF75445
TAIR:AT1G71100tair10-symbols:RSW10TIGRfam:TIGR00021TIGRFAMs:TIGR00021
UniGene:At.17810UniGene:At.67896UniPathway:UPA00115UniProt:Q9C998
Coordinates (TAIR10) chr1:+:26814726..26815529
Molecular Weight (calculated) 28333.30 Da
IEP (calculated) 4.75
GRAVY (calculated) 0.14
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL
101: DSHPVVDLSI DGADEVDPAL NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE ELFRDSGCVA KLRMKIGSNG
201: EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV EHGMFLGMAT TLIVAGKFGV TVKDRFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)