AT1G72340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NagB/RpiA/CoA transferase-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 2B (eIF-2B) family protein (TAIR:AT1G53900.1); Has 4473 Blast hits to 4473 proteins in 1031 species: Archae - 373; Bacteria - 1735; Metazoa - 520; Fungi - 473; Plants - 219; Viruses - 0; Other Eukaryotes - 1153 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27236898..27238482 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42193.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.04 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWRRSPSFIL DERRSSNSPP MADTTRGPFQ NPDSISAYYQ TRAAHHGVIT SDWLAQAQAA VGGVSGDAQH DLSVTDLGNE KSFNVIEEFN NWRKQPDLAE 101: AVAAIRALAA VIRASEASTM MELEIELKKA SDTLKSWDKT SISLTAGCDL FIRYVTRTSA LEYEDFNSAK SRLLERAEKF GEISCKARRI IAMLSQDFIF 201: DGCTILVHGL SRVVLEILKT AAQNNKLFRV LCTEGRPDGT GVLLSSELSK LDIPVKLLLD SAVAYSMDEV DMVFVGADGV VESGGIINMM GTYQIALVAH 301: SMNKPVYVAA ESYKFARLYP LDQKDMAPAL RPIEFGVKIP TKVEVERSAR DYTPPQYLTL LFTDLGVLSP SVVSDELIQL YL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)