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AT1G69600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger homeodomain 1
Curator
Summary (TAIR10)
Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.
Computational
Description (TAIR10)
zinc finger homeodomain 1 (ZFHD1); CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 26 (TAIR:AT5G60480.1); Has 480 Blast hits to 471 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28517DIP:DIP-46552NeggNOG:ENOG410IW64eggNOG:ENOG410YKTX
EMBL:AC021046EMBL:CP002684EnsemblPlants:AT1G69600EnsemblPlants:AT1G69600.1
entrez:843296Gene3D:1.10.10.60GeneID:843296Genevisible:Q9SEZ1
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009414GO:GO:0042803GO:GO:0045893GO:GO:0046872
Gramene:AT1G69600.1hmmpanther:PTHR31948hmmpanther:PTHR31948:SF8HOGENOM:HOG000238105
InParanoid:Q9SEZ1IntAct:Q9SEZ1InterPro:IPR006455InterPro:IPR006456
InterPro:IPR009057KEGG:ath:AT1G69600OMA:IKMRAFAPaxDb:Q9SEZ1
Pfam:PF04770Pfam:Q9SEZ1Pfscan:PS51523PhylomeDB:Q9SEZ1
PIR:F96717PRIDE:Q9SEZ1PRO:PR:Q9SEZ1ProDom:PD125774
PROSITE:PS51523ProteinModelPortal:Q9SEZ1Proteomes:UP000006548RefSeq:NP_177118.1
SMR:Q9SEZ1STRING:3702.AT1G69600.1SUPFAM:SSF46689TAIR:AT1G69600
tair10-symbols:ATHB29tair10-symbols:ZFHD1tair10-symbols:ZHD11TIGRfam:TIGR01565
TIGRfam:TIGR01566TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.50017
UniProt:Q9SEZ1
Coordinates (TAIR10) chr1:+:26182470..26183198
Molecular Weight (calculated) 26285.00 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.60
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)