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AT4G08570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.607
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121), Heavy-metal-associated, conserved site (InterPro:IPR017969); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G22990.1); Has 1185 Blast hits to 1127 proteins in 62 species: Archae - 2; Bacteria - 41; Metazoa - 2; Fungi - 0; Plants - 1133; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AF076275EMBL:AK226467
EMBL:AL161512EMBL:AY070406EMBL:AY096585EMBL:CP002687
EnsemblPlants:AT4G08570EnsemblPlants:AT4G08570.1entrez:826418GeneID:826418
GO:GO:0030001GO:GO:0046872Gramene:AT4G08570.1hmmpanther:PTHR22814
hmmpanther:PTHR22814:SF84HOGENOM:HOG000234967IntAct:O81464InterPro:IPR006121
InterPro:IPR017969KEGG:ath:AT4G08570OMA:PYTMVANPfam:PF00403
Pfscan:PS50846PhylomeDB:O81464PIR:T01827PROSITE:PS01047
PROSITE:PS50846Proteomes:UP000006548RefSeq:NP_192597.1scanprosite:PS01047
SMR:O81464STRING:3702.AT4G08570.1SUPFAM:SSF55008TAIR:AT4G08570
UniGene:At.28367UniProt:O81464
Coordinates (TAIR10) chr4:-:5455123..5455975
Molecular Weight (calculated) 16904.70 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.48
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVEGTMEYI SDLLKKRKRK KKKQMQTVAL RVARIDCEGC ERKIKHVLSG VKGVKSVDVD VKLQKVTVTG YIDPKKVLEA AKSTKKKVEL WPYVPYTMVA
101: NPYISQAYDK KAPPNMVRKV PDTASVNETT VDDSYTIMFS DENPNSCAIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)