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AT4G39700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G22990.1); Has 1218 Blast hits to 1176 proteins in 83 species: Archae - 0; Bacteria - 23; Metazoa - 6; Fungi - 46; Plants - 1141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2608eggNOG:KOG1603EMBL:AL022605EMBL:AL161595
EMBL:CP002687EnsemblPlants:AT4G39700EnsemblPlants:AT4G39700.1entrez:830125
GeneID:830125GO:GO:0030001GO:GO:0046872Gramene:AT4G39700.1
hmmpanther:PTHR22814hmmpanther:PTHR22814:SF126HOGENOM:HOG000234967IntAct:O65657
InterPro:IPR006121KEGG:ath:AT4G39700OMA:TITRYEDPfam:PF00403
Pfscan:PS50846PhylomeDB:O65657PIR:T05007PROSITE:PS50846
Proteomes:UP000006548RefSeq:NP_195680.1SMR:O65657STRING:3702.AT4G39700.1
SUPFAM:SSF55008TAIR:AT4G39700UniGene:At.54657UniProt:O65657
Coordinates (TAIR10) chr4:+:18424265..18424906
Molecular Weight (calculated) 17355.90 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.49
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVGGTLEYI SELIGNGGSH SYGKRKKKKQ FQTVELKVRM DCDGCVLKIK NSLSSLKGVK TVEINKKQQK VTVSGYADAS KVLKKAKATG KKAEIWPYVP
101: YNLVAQPYIA QAYDKKAPPG YVRKVDPNVT TGTMAVYYDD PSYTSLFSDD NPNACSIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)