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AT5G15210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 30
Curator
Summary (TAIR10)
Encodes ZFHD3, a member of the zinc finger homeodomain transcriptional factor family.
Computational
Description (TAIR10)
homeobox protein 30 (HB30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 34 (TAIR:AT3G28920.1); Has 512 Blast hits to 491 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 474; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:16650eggNOG:ENOG410IW64eggNOG:ENOG410YKTXEMBL:AL353993
EMBL:BT012195EMBL:CP002688EnsemblPlants:AT5G15210EnsemblPlants:AT5G15210.1
entrez:831373Gene3D:1.10.10.60GeneID:831373Genevisible:Q9LXG0
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0042803GO:GO:0044212GO:GO:0046872Gramene:AT5G15210.1
hmmpanther:PTHR31948hmmpanther:PTHR31948:SF8HOGENOM:HOG000238105InParanoid:Q9LXG0
IntAct:Q9LXG0InterPro:IPR006455InterPro:IPR006456InterPro:IPR009057
KEGG:ath:AT5G15210OMA:KEKMFEFPaxDb:Q9LXG0Pfam:PF04770
Pfam:Q9LXG0Pfscan:PS51523PhylomeDB:Q9LXG0PIR:T49956
PRIDE:Q9LXG0PRO:PR:Q9LXG0ProDom:PD125774PROSITE:PS51523
ProteinModelPortal:Q9LXG0Proteomes:UP000006548RefSeq:NP_197025.1SMR:Q9LXG0
STRING:3702.AT5G15210.1SUPFAM:SSF46689TAIR:AT5G15210tair10-symbols:ATHB30
tair10-symbols:HB30tair10-symbols:ZFHD3tair10-symbols:ZHD8TIGRfam:TIGR01565
TIGRfam:TIGR01566TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.27604
UniProt:Q9LXG0
Coordinates (TAIR10) chr5:-:4937874..4938689
Molecular Weight (calculated) 29383.80 Da
IEP (calculated) 8.91
GRAVY (calculated) -0.48
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)