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AT3G28917.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.522
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : mini zinc finger 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mini zinc finger 2 (MIF2); CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: mini zinc finger (TAIR:AT1G18835.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3RUeggNOG:ENOG410YXCJEMBL:AK221094EMBL:AP000386
EMBL:AY086885EMBL:BT024663EMBL:CP002686EnsemblPlants:AT3G28917
EnsemblPlants:AT3G28917.1entrez:2745896GeneID:2745896GO:GO:0003677
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
GO:GO:0007275GO:GO:0042803GO:GO:0046872Gramene:AT3G28917.1
hmmpanther:PTHR31948hmmpanther:PTHR31948:SF12HOGENOM:HOG000243140InParanoid:Q9LJW5
InterPro:IPR006456iPTMnet:Q9LJW5KEGG:ath:AT3G28917OMA:IETEVVC
PaxDb:Q9LJW5Pfam:PF04770Pfam:Q9LJW5Pfscan:PS51523
PhylomeDB:Q9LJW5PRIDE:Q9LJW5PRO:PR:Q9LJW5ProDom:PD125774
PROSITE:PS51523Proteomes:UP000006548RefSeq:NP_974373.1STRING:3702.AT3G28917.1
TAIR:AT3G28917tair10-symbols:MIF2TIGRfam:TIGR01566TIGRFAMs:TIGR01566
UniGene:At.47938UniGene:At.68150UniProt:Q9LJW5
Coordinates (TAIR10) chr3:+:10925014..10925316
Molecular Weight (calculated) 10793.60 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.53
Length 100 amino acids
Sequence (TAIR10)
(BLAST)
1: MRKRQVVLRR ASPEEPSRSS STASSLTVRT VRYGECQKNH AAAVGGYAVD GCREFMASRG EEGTVAALTC AACGCHRSFH RREIETEVVC DCNSPPSTGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)