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AT1G23420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Plant-specific transcription factor YABBY family protein
Curator
Summary (TAIR10)
Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.
Computational
Description (TAIR10)
INNER NO OUTER (INO); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2); Has 465 Blast hits to 458 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:24189eggNOG:ENOG410IXP9eggNOG:ENOG410YJBPEMBL:AC005292
EMBL:AC007945EMBL:AF195047EMBL:CP002684EnsemblPlants:AT1G23420
EnsemblPlants:AT1G23420.1entrez:838950ExpressionAtlas:Q9LDT3Gene3D:1.10.30.10
GeneID:838950Genevisible:Q9LDT3GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006355GO:GO:0009944GO:GO:0046872
GO:GO:0048481Gramene:AT1G23420.1hmmpanther:PTHR31675hmmpanther:PTHR31675:SF8
InParanoid:Q9LDT3IntAct:Q9LDT3InterPro:IPR006780InterPro:IPR009071
KEGG:ath:AT1G23420OMA:NWAHFPPPANTHER:PTHR31675PaxDb:Q9LDT3
Pfam:PF04690Pfam:Q9LDT3PhylomeDB:Q1PFT2PhylomeDB:Q9LDT3
PRO:PR:Q9LDT3ProteinModelPortal:Q9LDT3Proteomes:UP000006548RefSeq:NP_564194.1
STRING:3702.AT1G23420.1SUPFAM:SSF47095TAIR:AT1G23420tair10-symbols:INO
UniGene:At.11885UniProt:Q1PFT2UniProt:Q9LDT3
Coordinates (TAIR10) chr1:+:8317423..8319104
Molecular Weight (calculated) 25958.60 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.47
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKLPNMTTT LNHLFDLPGQ ICHVQCGFCT TILLVSVPFT SLSMVVTVRC GHCTSLLSVN LMKASFIPLH LLASLSHLDE TGKEEVAATD GVEEEAWKVN
101: QEKENSPTTL VSSSDNEDED VSRVYQVVNK PPEKRQRAPS AYNCFIKEEI RRLKAQNPSM AHKEAFSLAA KNWAHFPPAH NKRAASDQCF CEEDNNAILP
201: CNVFEDHEES NNGFRERKAQ RHSIWGKSPF E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)