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AT4G01500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NGATHA4 (NGA4); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT1G01030.1); Has 1433 Blast hits to 1432 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12049eggNOG:ENOG410JVZXeggNOG:ENOG41105EBEMBL:AB493670
EMBL:AF096370EMBL:AL161492EMBL:BT029520EMBL:CP002687
EMBL:FJ873734EnsemblPlants:AT4G01500EnsemblPlants:AT4G01500.1entrez:826750
Gene3D:2.40.330.10GeneID:826750Genevisible:O82595GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009908
GO:GO:0048366Gramene:AT4G01500.1hmmpanther:PTHR31140hmmpanther:PTHR31140:SF4
HOGENOM:HOG000239355InParanoid:O82595InterPro:IPR003340InterPro:IPR015300
KEGG:ath:AT4G01500OMA:WNLGRSEPaxDb:O82595Pfam:O82595
Pfam:PF02362Pfscan:PS50863PIR:T01944PRIDE:O82595
PRO:PR:O82595PROSITE:PS50863ProteinModelPortal:O82595Proteomes:UP000006548
RefSeq:NP_192059.4SMART:SM01019SMR:O82595STRING:3702.AT4G01500.1
SUPFAM:SSF101936TAIR:AT4G01500tair10-symbols:NGA4UniGene:At.34418
UniProt:O82595
Coordinates (TAIR10) chr4:+:639791..640792
Molecular Weight (calculated) 38513.80 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.82
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MNISTMNLDQ ELAEIRASSS DHTNYFYSSE RREHMFDKVL TPSDVGKLNR LVIPKQHAEN FFPLEDNQNG TVLDFQDKNG KMWRFRYSYW NSSQSYVMTK
101: GWSRFVKEKK LFAGDTVSFY RGYIPDDNAQ PERRRKIMFI DWRPRAEINF VHNINNHNFV FGSPTYPTAR FYPVTPEYSM PYRSFPPFYQ NQFQEREYLG
201: YGYGRVVNGN GVRYYAGSPL DQHHQWNLGR SEPLVYDSVP VFPAGRVPPS APPQPSTTKK LRLFGVDVEE SSSSGDTRGE MGVAGYSSSS PVVIRDDDQS
301: FWRSPRGEMA SSSSAMQLSD DEEYKRKGKS LEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)