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AT1G51120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AP2/B3 transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3 transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2/B3 transcription factor family protein (TAIR:AT1G50680.1); Has 3916 Blast hits to 3909 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3901; Viruses - 4; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:26760DNASU:841535eggNOG:ENOG410IWEFeggNOG:ENOG410YI8X
EMBL:AC079828EMBL:AY560883EMBL:CP002684EnsemblPlants:AT1G51120
EnsemblPlants:AT1G51120.1entrez:841535Gene3D:2.40.330.10Gene3D:3.30.730.10
GeneID:841535Genevisible:Q9C688GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT1G51120.1
hmmpanther:PTHR31140hmmpanther:PTHR31140:SF13HOGENOM:HOG000090522InParanoid:Q9C688
InterPro:IPR001471InterPro:IPR003340InterPro:IPR015300InterPro:IPR016177
KEGG:ath:AT1G51120KO:K09287OMA:NIVGSKQPaxDb:Q9C688
Pfam:PF02362Pfam:Q9C688Pfscan:PS50863Pfscan:PS51032
PhylomeDB:Q9C688PIR:F96548PRIDE:Q9C688PRO:PR:Q9C688
PROSITE:PS50863PROSITE:PS51032ProteinModelPortal:Q9C688Proteomes:UP000006548
RefSeq:NP_175524.1SMART:SM00380SMART:SM01019SMR:Q9C688
STRING:3702.AT1G51120.1SUPFAM:SSF101936SUPFAM:SSF54171TAIR:AT1G51120
UniGene:At.50656UniProt:Q9C688
Coordinates (TAIR10) chr1:+:18938091..18939149
Molecular Weight (calculated) 40309.60 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.57
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEMSNVAKT TTETSGLTDS VLSLTKRMKP TEVTTTTKPA LSNTTKFKGV VQQQNGHWGA QIYADHRRIW LGTFKSAHEA AAAYDSASIK LRSFDANSHR
101: NFPWSDFTLH EPDFQECYTT EAVLNMIRDG SYQHKFRDFL RIRSQIVANI NIVGSKQVLG GGEGGQESNK CFSCTQLFQK ELTPSDVGKL NRLVIPKKYA
201: VKYMPFISDD QSEKETSEGV EDVEVVFYDR AMRQWKFRYC YWRSSQSFVF TRGWNGFVKE KNLKEKDIIV FYTCDVPNNV KTLEGQSKTF LMIDVHHFSG
301: NGFVVPEEVN KTVHEISDEE MKTETLFTSK VEEETKSEEK KGGFMLFGVR IQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)