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AT5G60480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : homeobox protein 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox protein 26 (HB26); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: zinc finger homeodomain 1 (TAIR:AT1G69600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTT3eggNOG:ENOG41107J9EMBL:AB011483EMBL:CP002688
EnsemblPlants:AT5G60480EnsemblPlants:AT5G60480.1entrez:836169ExpressionAtlas:Q9FKJ9
Gene3D:1.10.10.60GeneID:836169GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0042803GO:GO:0046872
Gramene:AT5G60480.1hmmpanther:PTHR31948hmmpanther:PTHR31948:SF8HOGENOM:HOG000238105
IntAct:Q9FKJ9InterPro:IPR006455InterPro:IPR006456InterPro:IPR009057
KEGG:ath:AT5G60480PaxDb:Q9FKJ9Pfam:PF04770Pfscan:PS51523
PhylomeDB:Q9FKJ9PRO:PR:Q9FKJ9ProDom:PD125774PROSITE:PS51523
ProteinModelPortal:Q9FKJ9Proteomes:UP000006548RefSeq:NP_200856.1SMR:Q9FKJ9
STRING:3702.AT5G60480.1SUPFAM:SSF46689TAIR:AT5G60480tair10-symbols:AtHB26
tair10-symbols:HB26tair10-symbols:ZHD12TIGRfam:TIGR01565TIGRfam:TIGR01566
TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniGene:At.55644UniProt:F4JYZ9
UniProt:Q9FKJ9
Coordinates (TAIR10) chr5:+:24323594..24324169
Molecular Weight (calculated) 21688.10 Da
IEP (calculated) 10.38
GRAVY (calculated) -0.62
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVLYNECLK NHAVSLGGHA LDGCGEFTPK STTILTDPPS LRCDACGCHR NFHRRSPSDG FSQHRSPPSP LQLQPLAPVP NLLLSLSSGF FGPSDQEVKN
101: KFTVERDVRK TAMIKKHKRT KFTAEQKVKM RGFAERAGWK INGWDEKWVR EFCSEVGIER KVLKVWIHNN KYFNNGRSRD TTSSMSLNLK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)