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AT5G08070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : TCP domain protein 17
Curator
Summary (TAIR10)
TCP gene involved in heterochronic control of leaf differentiation.
Computational
Description (TAIR10)
TCP domain protein 17 (TCP17); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (TAIR:AT5G60970.1); Has 1349 Blast hits to 1349 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:15979eggNOG:ENOG410JTVCeggNOG:ENOG41107H4EMBL:AL357612
EMBL:BT029995EMBL:CP002688EnsemblPlants:AT5G08070EnsemblPlants:AT5G08070.1
entrez:830701GeneID:830701Genevisible:Q9LEZ9GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009965GO:GO:0030154GO:GO:0045962Gramene:AT5G08070.1
hmmpanther:PTHR31072hmmpanther:PTHR31072:SF24HOGENOM:HOG000154528InParanoid:Q9LEZ9
InterPro:IPR005333InterPro:IPR017887KEGG:ath:AT5G08070OMA:WNNPRIV
PaxDb:Q9LEZ9Pfam:PF03634Pfam:Q9LEZ9Pfscan:PS51369
PhylomeDB:Q9LEZ9PIR:T50492PRIDE:Q9LEZ9PRO:PR:Q9LEZ9
PROSITE:PS51369Proteomes:UP000006548RefSeq:NP_196424.1STRING:3702.AT5G08070.1
TAIR:AT5G08070tair10-symbols:TCP17UniGene:At.54775UniProt:Q9LEZ9
Coordinates (TAIR10) chr5:+:2584885..2585613
Molecular Weight (calculated) 27413.40 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.54
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR IRLSVMTAIQ VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF
101: HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN
201: NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)