AT1G26300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : BSD domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:9096023..9099746 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34821.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.47 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDLWKRAKS FAEEAGKKSQ TITQSSSATF VNLVTETAKK SKELALEASK KADQFNAADF VAETAKKSKE FAAEASKKAD QFKVAALKQA DQIQNIKSIA 101: DIIGTGTGSG SGSEAELLEF GVTDDLREFA EGLTSATFQA FPDQDQGDEV SDVITNASNV RKDLSDWQER HATLVLTSVK QISKLRYELC PRFMKERRFW 201: RIYFTLVSTH VSPYERKYME ELKTKGEHGN EEAKKAPATG ETETVEKNVA IRRTSTASSE QDLDTFLLGD LEDSDEAPDD GDGSLEDDFD KIGNSDVEDE 301: KQSSKATTNA GNEVSC |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)