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AT1G18400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BR enhanced expression 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BR enhanced expression 1 (BEE1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BR enhanced expression 3 (TAIR:AT1G73830.1); Has 2046 Blast hits to 2038 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 35; Plants - 1999; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:23660eggNOG:ENOG410IXK8eggNOG:ENOG410YIJYEMBL:AC013354
EMBL:AF488579EMBL:AK117269EMBL:AY138253EMBL:BT005268
EMBL:CP002684EnsemblPlants:AT1G18400EnsemblPlants:AT1G18400.1entrez:838421
Gene3D:4.10.280.10GeneID:838421Genevisible:Q8GZ13GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:1902448Gramene:AT1G18400.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF94
HOGENOM:HOG000090950IntAct:Q8GZ13InterPro:IPR011598InterPro:IPR031064
KEGG:ath:AT1G18400MINT:MINT-8145918ncoils:CoilOMA:DQLNINT
PANTHER:PTHR12565:SF94PaxDb:Q8GZ13Pfam:PF00010Pfam:Q8GZ13
Pfscan:PS50888PhylomeDB:Q8GZ13PRO:PR:Q8GZ13PROSITE:PS50888
ProteinModelPortal:Q8GZ13Proteomes:UP000006548RefSeq:NP_173276.2SMART:SM00353
SMR:Q8GZ13STRING:3702.AT1G18400.1SUPFAM:SSF47459TAIR:AT1G18400
tair10-symbols:BEE1UniGene:At.46141UniProt:Q8GZ13
Coordinates (TAIR10) chr1:+:6331464..6333576
Molecular Weight (calculated) 29365.30 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.69
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MANFENLSSD FQTIAMDIYS SITQAADLNN NNSNLHFQTF HPSSTSLESL FLHHHQQQLL HFPGNSPDSS NNFSSTSSFL HSDHNIVDET KKRKALLPTL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQRAKARETV EMGRQTRDGS PVFHLSTWSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)