AT4G30180.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : sequence-specific DNA binding transcription factors;transcription regulators | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
sequence-specific DNA binding transcription factors;transcription regulators; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18969.1); Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:14769028..14769504 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 17810.40 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||
Length | 158 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MERQIINRKK RVFSLEPNKN PSAVFTRKYT SHLVPALKKL NMNKNSSKQT VKHEVDMALA LSAQEFAWSR FLLQKLSSSS NPTTTTSSSS DGIRILERPD 101: KEGGNEEGGI EERLRELKKL LPGGEEMNVE EMLSEIGNYI KCLELQTIAL KSIVQDST |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)