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AT4G30180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors;transcription regulators
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors;transcription regulators; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18969.1); Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J40ReggNOG:ENOG410YVN8EMBL:AB493708EMBL:AL109796
EMBL:AL161576EMBL:BT010671EMBL:BT010967EMBL:CP002687
EnsemblPlants:AT4G30180EnsemblPlants:AT4G30180.1entrez:829141ExpressionAtlas:C0SVK5
ExpressionAtlas:Q9SUM5GeneID:829141GO:GO:0003700GO:GO:0006355
Gramene:AT4G30180.1hmmpanther:PTHR33124hmmpanther:PTHR33124:SF4HOGENOM:HOG000029164
InParanoid:Q9SUM5iPTMnet:Q9SUM5KEGG:ath:AT4G30180OMA:KLNMNKN
PaxDb:Q9SUM5Pfam:Q9SUM5PhylomeDB:Q9SUM5PIR:T14078
PRIDE:Q9SUM5PRO:PR:Q9SUM5ProteinModelPortal:Q9SUM5Proteomes:UP000006548
RefSeq:NP_194747.1STRING:3702.AT4G30180.1TAIR:AT4G30180UniGene:At.31852
UniProt:C0SVK5UniProt:Q9SUM5
Coordinates (TAIR10) chr4:+:14769028..14769504
Molecular Weight (calculated) 17810.40 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.62
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MERQIINRKK RVFSLEPNKN PSAVFTRKYT SHLVPALKKL NMNKNSSKQT VKHEVDMALA LSAQEFAWSR FLLQKLSSSS NPTTTTSSSS DGIRILERPD
101: KEGGNEEGGI EERLRELKKL LPGGEEMNVE EMLSEIGNYI KCLELQTIAL KSIVQDST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)