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AT5G64640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G64640-MONOMERBRENDA:3.1.1.11EC:3.1.1.11eggNOG:COG4677
eggNOG:ENOG410IFZXEMBL:AB010076EMBL:AY128320EMBL:CP002688
EnsemblPlants:AT5G64640EnsemblPlants:AT5G64640.1entrez:836585Gene3D:1.20.140.40
Gene3D:2.160.20.10GeneID:836585Genevisible:Q8L7Q7GO:GO:0004857
GO:GO:0005618GO:GO:0005886GO:GO:0016021GO:GO:0030599
GO:GO:0042545GO:GO:0045330GO:GO:0045490Gramene:AT5G64640.1
gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF2
HOGENOM:HOG000217409InParanoid:Q8L7Q7InterPro:IPR000070InterPro:IPR006501
InterPro:IPR011050InterPro:IPR012334KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT5G64640OMA:QHRTESTPaxDb:Q8L7Q7Pfam:PF01095
Pfam:PF04043Pfam:Q8L7Q7PhylomeDB:Q8L7Q7PRIDE:Q8L7Q7
PRO:PR:Q8L7Q7ProteinModelPortal:Q8L7Q7Proteomes:UP000006548RefSeq:NP_568991.2
SMART:SM00856SMR:Q8L7Q7STRING:3702.AT5G64640.1SUPFAM:SSF101148
SUPFAM:SSF51126TAIR:AT5G64640TIGRfam:TIGR01614TIGRFAMs:TIGR01614
TMHMM:TMhelixUniGene:At.28947UniGene:At.69346UniPathway:UPA00545
UniProt:Q8L7Q7
Coordinates (TAIR10) chr5:+:25836820..25839053
Molecular Weight (calculated) 65480.90 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.25
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSPTLPHSI SASSSTPFAS AAVKPHRNKL LSRNGILIII AASCILLLLI SLLIYATVSK SSRNHHNPSH QTPTSDDHPP PETPPSPPPI AQIRLACNAT
101: RFPDHCVASL SKPGQVPPDP KPVQIIHSAI SVSYENLKSG QSKIQSILDS SAGNRNRTNI ATICLEILSY SQHRTESTDI AVTSGDIKDA RAWMSAALAY
201: QFDCWSGLKT VNDTKQVVDT ITFFEGLVNL TGNALSMMLS FDSFGDDVVS WIRPATERDG FWEKAGPSLG SGTGTEASLG FPSGLTEDVT VCKNGGKDCK
301: YKTVQEAVDS APDTNRTVKF VIRIREGVYE ETVRVPFEKK NVVFIGDGMG KTVITGSLNV GQPGMTTFES ATVGVLGDGF MARDLTIENT AGADAHQAVA
401: FRSDSDFSVL ENCEFLGNQD TLYAHSLRQF YKQCRIQGNV DFIFGNSAAV FQDCDILIAS KHSKLEQGGA NNAITAHGRI DASQSTGFVF LNCSINGTEE
501: YMKEFQANPE GHKNFLGRPW KEFSRTVFVN CNLESLISPD GWMPWNGDFA LKTLYYGEYK NTGPGSVRSS RVPWSSEIPE KHVDVYSVAN FIQADEWAST
601: TA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)