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AT1G76640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.652
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 14790 Blast hits to 11980 proteins in 1260 species: Archae - 1; Bacteria - 39; Metazoa - 6093; Fungi - 2725; Plants - 3859; Viruses - 2; Other Eukaryotes - 2071 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AC010718EMBL:CP002684
EnsemblPlants:AT1G76640EnsemblPlants:AT1G76640.1entrez:843997Gene3D:1.10.238.10
GeneID:843997Genevisible:Q9SRE7GO:GO:0005509GO:GO:0005737
Gramene:AT1G76640.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF592HOGENOM:HOG000233018
InParanoid:Q9SRE7InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT1G76640KO:K13448ncoils:CoilOMA:ATTTTNC
PaxDb:Q9SRE7Pfam:PF13499Pfam:PF13833Pfam:Q9SRE7
Pfscan:PS50222PhylomeDB:Q9SRE7PIR:F96794PRIDE:Q9SRE7
PRO:PR:Q9SRE7PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9SRE7
Proteomes:UP000006548RefSeq:NP_177790.1scanprosite:PS00018SMART:SM00054
SMR:Q9SRE7STRING:3702.AT1G76640.1SUPFAM:SSF47473TAIR:AT1G76640
UniGene:At.51311UniProt:Q9SRE7
Coordinates (TAIR10) chr1:-:28765324..28765803
Molecular Weight (calculated) 18146.80 Da
IEP (calculated) 4.28
GRAVY (calculated) -0.46
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNTQRQLSS SFMKFLEEKN RDLEAVFAYM DANRDGRISA EELKKSFKTL GEQMSDEEAE AAVKLSDIDG DGMLDINEFA LLIKGNDEFT EEEKKRKIME
101: AFRMYIADGE DCITPGSLKM MLMKLGESRT TDDCKVMIQA FDLNADGVLS FDEFALMMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)