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AT1G59740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G33440.1); Has 6789 Blast hits to 6649 proteins in 1324 species: Archae - 0; Bacteria - 3372; Metazoa - 487; Fungi - 362; Plants - 2181; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AC007258EMBL:AY035037
EMBL:AY051041EMBL:CP002684EnsemblPlants:AT1G59740EnsemblPlants:AT1G59740.1
entrez:842267GeneID:842267Genevisible:Q93VV5GO:GO:0005215
GO:GO:0005886GO:GO:0006857GO:GO:0009624GO:GO:0016021
Gramene:AT1G59740.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF177HOGENOM:HOG000237400
InParanoid:Q93VV5InterPro:IPR000109InterPro:IPR018456InterPro:IPR020846
KEGG:ath:AT1G59740OMA:DHHVANDPANTHER:PTHR11654PaxDb:Q93VV5
Pfam:PF00854Pfam:Q93VV5PhylomeDB:Q93VV5PIR:C96621
PRIDE:Q93VV5PRO:PR:Q93VV5PROSITE:PS01022ProteinModelPortal:Q93VV5
Proteomes:UP000006548RefSeq:NP_176183.1scanprosite:PS01022SMR:Q93VV5
STRING:3702.AT1G59740.1SUPFAM:SSF103473TAIR:AT1G59740TMHMM:TMhelix
UniGene:At.11372UniProt:Q93VV5
Coordinates (TAIR10) chr1:+:21968227..21972312
Molecular Weight (calculated) 66045.60 Da
IEP (calculated) 9.33
GRAVY (calculated) 0.24
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEINKQSNK WEQEEVSNEN NWELAEEESV DWRGRPSNPN KHGGMRAALF VLGLQAFEIM GIAAVGNNLI TYVINEMHFP LSKAANIVTN FVGTIFIFAL
101: LGGYLSDAFL GSFWTIIIFG FVELSGFILL SVQAHLPQLK PPKCNPLIDQ TCEEAKGFKA MIFFMALYLV ALGSGCVKPN MIAHGADQFS QSHPKQSKRL
201: SSYFNAAYFA FSMGELIALT LLVWVQTHSG MDIGFGVSAA AMTMGIISLV SGTMYFRNKR PRRSIFTPIA HVIVAAILKR KLASPSDPRM LHGDHHVAND
301: VVPSSTLPHT PRFRFLDKAC IKIQDTNTKE SPWRLCTVTQ VEQVKTLISL VPIFASTIVF NTILAQLQTF SVQQGSSMNT RLSNSFHIPP ASLQAIPYIM
401: LIFLVPLYDS FLVPFARKLT GHNSGIPPLT RIGIGLFLST FSMVSAAMLE KKRRDSSVLD GRILSIFWIT PQFLIFGISE MFTAVGLIEF FYKQSAKGME
501: SFLMALTYCS YSFGFYFSSV LVSVVNKITS TSVDSKGWLG ENDLNKDRLD LFYWLLAVLS LLNFLSYLFW SRWNIKSSRR NNTNVVGDEN I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)