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AT1G61660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1); Has 1502 Blast hits to 1260 proteins in 110 species: Archae - 0; Bacteria - 97; Metazoa - 123; Fungi - 48; Plants - 982; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).
Protein Annotations
BioGrid:27685eggNOG:ENOG410IVTReggNOG:ENOG410YDUVEMBL:AC005882
EMBL:AF380649EMBL:AF488630EMBL:AY085602EMBL:AY113072
EMBL:CP002684EnsemblPlants:AT1G61660EnsemblPlants:AT1G61660.1entrez:842462
ExpressionAtlas:Q94JL3Gene3D:4.10.280.10GeneID:842462Genevisible:Q94JL3
GO:GO:0001046GO:GO:0001228GO:GO:0003700GO:GO:0005634
GO:GO:0006366GO:GO:0042631GO:GO:0043565GO:GO:0045893
GO:GO:0045944GO:GO:0071215GO:GO:0071472GO:GO:2000214
GO:GO:2000377hmmpanther:PTHR16223hmmpanther:PTHR16223:SF21HOGENOM:HOG000241059
InParanoid:Q94JL3IntAct:Q94JL3InterPro:IPR011598OMA:RVTTPSP
PaxDb:Q94JL3Pfam:Q94JL3Pfscan:PS50888PhylomeDB:Q94JL3
PIR:A96642PRO:PR:Q94JL3PROSITE:PS50888ProteinModelPortal:Q94JL3
Proteomes:UP000006548RefSeq:NP_564782.1RefSeq:NP_849836.1SMART:SM00353
STRING:3702.AT1G61660.1SUPFAM:SSF47459TAIR:AT1G61660UniGene:At.22850
UniProt:Q94JL3
Coordinates (TAIR10) chr1:-:22754003..22756171
Molecular Weight (calculated) 43043.40 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.66
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEFKATAS ICGGGGGAWW NSPRSVMSPS DHFLSPCFGA AITSNDFSSQ ENHLKSRMTC TDNNNIVFGQ READSDSGGS TVTMDSTLQM MGLGFSSNCS
101: SDWNQTILQE DLNSSFIRSS QDQDHGQGFL STTTSPYILN PACSSSPSTS SSSSLIRTFY DPEPSPYNFV STTSGSINDP QLSWANKTNP HHQVAYGLIN
201: SFSNNANSRP FWNSSSTTNL NNTTPSNFVT TPQIISTRLE DKTKNLKTRA QSESLKRAKD NESAAKKPRV TTPSPLPTFK VRKENLRDQI TSLQQLVSPF
301: GKTDTASVLQ EAIEYIKFLH DQVTVLSTPY MKQGASNQQQ QQISGKSKSQ DENENHELRG HGLCLVPISS TFPVANETTA DFWTPTFGGN NFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)