AT5G12300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.918 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G55530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3978508..3979632 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42106.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLKQASSA SGFCYHQGFS GVLQVYVHNA RNINNICIYD NQDVYAKFSL TYNPDDTIST RIIHRAGKNP EFNQKLMIDV TQIDAHAAVL KCEIWMMSRA 101: RHYMEDQLLG FALVPISDII GQDSVTQDYS LSSTDLFHSP AGTVKLTLSI VNPSSTSSSN PKINTTSISS EVVLLDPQVS ETVDYTRIEF PDINVANENK 201: QMVTEYFNES GTGSFLCLGS THGPETDITM VCLEEKELYG NGSFMASSST TTSLSDEKNT ADSNEKENRE ITEVSRRRSK EGEEEEEENK MNEETTMQKQ 301: IAEMYMRSMQ QFTESLAKMK LPMDLHNKPH EEDHSNNNNN TATQIQNQNN NANNNGMEKK KEGSRVFYGS RAFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)