AT3G20640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G61660.1); Has 3293 Blast hits to 1784 proteins in 150 species: Archae - 0; Bacteria - 39; Metazoa - 261; Fungi - 101; Plants - 1460; Viruses - 0; Other Eukaryotes - 1432 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7210654..7213199 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49066.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||
| Length | 454 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDHHDFINS GSWWKVSSSS SPSSSSSMRA SSIESGGSAV FHDKLHHHSL ATDHHLQMIG LGLSSQSPVD QWNQSLLRGD SKAETSFGVM LQENLNLDAT 101: SNANANTTSS TSSYQLQESD SSHHHQALWR DPQSDFKPQI LTSGGNRGFF LDHQFSPHGS SSTDSSTVTC QGFAVDNSSN AMYAATTTTP NSSSGMFHHQ 201: QAGGFGSSDQ QPSRNHQQSS LGYSQFGSST GNYDQMASAL PSTWFLRSSP PPKPHSPLRF SNNATFWNPA AAGNAGAPPP HDASSNFFPA LQPPQIHPQS 301: FDEQPKNISE IRDSSSNEVK RGGNDHQPAA KRAKSEAASP SPAFKRKEKM GDRIAALQQL VSPFGKTDAA SVLSEAIEYI KFLHQQVSAL SNPYMKSGAS 401: LQHQQSDHST ELEVSEEPDL RSRGLCLVPV SSTFPVTHDT TVDFWTPTFG GTFR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)