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AT2G41835.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (C2H2 type, AN1-like) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C2H2 type, AN1-like) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type, AN1-like) family protein (TAIR:AT3G57480.1); Has 760 Blast hits to 744 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 122; Plants - 83; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JCHeggNOG:KOG3183EMBL:AC002339EMBL:AY065272
EMBL:AY096620EMBL:CP002685EnsemblPlants:AT2G41835EnsemblPlants:AT2G41835.1
entrez:818783Gene3D:4.10.1110.10GeneID:818783GO:GO:0008270
Gramene:AT2G41835.1hmmpanther:PTHR14677hmmpanther:PTHR14677:SF14HOGENOM:HOG000030254
InParanoid:Q8VZ42InterPro:IPR000058InterPro:IPR007087InterPro:IPR008598
InterPro:IPR015880KEGG:ath:AT2G41835OMA:IRCKDCTPaxDb:Q8VZ42
Pfam:PF01428Pfam:PF05605Pfam:Q8VZ42Pfscan:PS50157
Pfscan:PS51039PhylomeDB:Q8VZ42PRIDE:Q8VZ42PRO:PR:Q8VZ42
PROSITE:PS00028PROSITE:PS50157PROSITE:PS51039ProteinModelPortal:Q8VZ42
Proteomes:UP000006548RefSeq:NP_850358.1scanprosite:PS00028SMART:SM00154
SMART:SM00355SMR:Q8VZ42STRING:3702.AT2G41835.1SUPFAM:SSF118310
TAIR:AT2G41835UniGene:At.28535UniProt:Q8VZ42
Coordinates (TAIR10) chr2:-:17458020..17459414
Molecular Weight (calculated) 31254.00 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.73
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK
101: CPVPRCKEYL TFSNTIKCRD CNVDHCLKHR FGPDHTCPGP RKLPFMGFLS SSTTRKEAKT TRPNKAHPST SSSSSSSRWS NLLSSAEAGI SRLGNDISQK
201: LQFSSSKDNG IVEVCPQCGA KFSSVTSLVE HVEKTHERNK KQNHGNVTVD VCPRCSRGFR DPVDLVNHIE RDHRGTSKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)