AT5G54510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.805 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DWARF IN LIGHT 1 (DFL1); FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus, auxin mediated signaling pathway, unidimensional cell growth; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G27260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22131321..22133564 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68900.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 612 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPEAPKIAAL EVSDESLAEK NKNKLQFIED VTTNADDVQR RVLEEILSRN ADVEYLKRHG LEGRTDRETF KHIMPVVTYE DIQPEINRIA NGDKSQVLCS 101: NPISEFLTSS GTSGGERKLM PTIEEELDRR SLLYSLLMPV MDQFVPGLDK GKGMYFLFIK SESKTPGGLP ARPVLTSYYK SSHFKNRPYD PYTNYTSPNQ 201: TILCSDSYQS MYSQMLCGLC QHKEVLRVGA VFASGFIRAI KFLEKHWPEL ARDIRTGTLS SEITDSSVRE AVGEILKPDP KLADFVESEC RKTSWQGIIT 301: RLWPNTKYVD VIVTGTMSQY IPTLDYYSNG LPLVCTMYAS SECYFGVNLR PLCKPSEVSY TLIPNMAYFE FLPVHRNSGV TSSISLPKAL TEKEQQELVD 401: LVDVKLGQEY ELVVTTYAGL YRYRVGDVLS VAGFKNNAPQ FSFICRKNVV LSIDSDKTDE VELQNAVKNA VTHLVPFDAS LSEYTSYADT SSIPGHYVLF 501: WELCLNGNTP IPPSVFEDCC LTIEESLNSV YRQGRVSDKS IGPLEIKMVE SGTFDKLMDY AISLGASINQ YKTPRCVKFA PIIELLNSRV VDSYFSPKCP 601: KWSPGHKQWG SN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)