AT5G51670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.663 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF668) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF668); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1); Has 324 Blast hits to 279 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20993560..20995096 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53171.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.54 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||
| Length | 474 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALETFLIKL KNAISSKPTS RRPHRSSPPI STTTSSVGVL SFEVARVMTK LLHLTHSLTD SNLLTPRDHS LSLEGLTKIV NGDETFHLSL VCAELADSLA 101: HAANSVSRLS NRCTTASLRS FHRLFHEFAD MGRDPHGWVM NCKDTEAKNK KIERYVSVTT ALYREMEEMA ILENSLRKQS LQIGIEFEEE EDYENKKDVM 201: KVIDLQNKIE RQKQHVKYLK DRSLWNKSFD TVVLILARSV FTALARLKSV FSSAAATGYM VPTVVSSLPR SLSSSSSSMN LVHPSPNDEE RDKTTTSSAF 301: LEESSRLLKP PETTLGGAGV ALHYANLIVV MEKMIKQPQL VGLDARDDLY SMLPASVRSS LRSRLKGVGF TATDGGLATE WKAALGRILR WLLPLAQNMI 401: RWQSERSFEQ QHMATATNSQ NRVMLVQTLV FADKVKTEAA ITELLVGLNY IWRFEREMTA KALFNLQCPP TNYS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)