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AT1G28130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.907
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive GH3 family protein
Curator
Summary (TAIR10)
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational
Description (TAIR10)
GH3.17; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1405 Blast hits to 1296 proteins in 239 species: Archae - 0; Bacteria - 491; Metazoa - 54; Fungi - 2; Plants - 672; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G28130-MONOMERBioCyc:ARA:GQT-1573-MONOMERBioCyc:MetaCyc:AT1G28130-MONOMERBioGrid:24941
EC:6.3.2.-eggNOG:ENOG410IHP5eggNOG:ENOG410YCN3EMBL:AC021044
EMBL:AC069471EMBL:AY052283EMBL:AY113067EMBL:CP002684
EnsemblPlants:AT1G28130EnsemblPlants:AT1G28130.1entrez:839706GeneID:839706
Genevisible:Q9FZ87GO:GO:0005634GO:GO:0005737GO:GO:0009733
GO:GO:0010252GO:GO:0010279gramene_pathway:6.3.-.-gramene_pathway:PWY-2021
gramene_pathway:PWY-6219hmmpanther:PTHR31901hmmpanther:PTHR31901:SF18HOGENOM:HOG000238302
InParanoid:Q9FZ87InterPro:IPR004993iPTMnet:Q9FZ87KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT1G28130KO:K14487
OMA:EVLAMNTPANTHER:PTHR31901PaxDb:Q9FZ87Pfam:PF03321
Pfam:Q9FZ87PhylomeDB:Q9FZ87PIR:B86407PRIDE:Q9FZ87
PRO:PR:Q9FZ87ProteinModelPortal:Q9FZ87Proteomes:UP000006548RefSeq:NP_174134.1
RefSeq:NP_849718.1SMR:Q9FZ87STRING:3702.AT1G28130.1TAIR:AT1G28130
tair10-symbols:GH3.17UniGene:At.23008UniGene:At.75591UniProt:Q9FZ87
Coordinates (TAIR10) chr1:+:9825431..9827883
Molecular Weight (calculated) 68867.70 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.31
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPSYDPNDT EAGLKLLEDL TTNAEAIQQQ VLHQILSQNS GTQYLRAFLD GEADKNQQSF KNKVPVVNYD DVKPFIQRIA DGESSDIVSA QPITELLTSS
101: GTSAGKPKLM PSTAEELERK TFFYSMLVPI MNKYVDGLDE GKGMYLLFIK PEIKTPSGLM ARPVLTSYYK SQHFRNRPFN KYNVYTSPDQ TILCQDSKQS
201: MYCQLLCGLV QRSHVLRVGA VFASAFLRAV KFLEDHYKEL CADIRTGTVT SWITDSSCRD SVLSILNGPN QELADEIESE CAEKSWEGIL RRIWPKAKYV
301: EVIVTGSMAQ YIPTLEFYSG GLPLVSTMYA SSECYFGINL NPLCDPADVS YTLLPNMAYF EFLPVDDKSH EEIHFATHSN TDDDDDALKE DLIVNLVNVE
401: VGQYYEIVIT TFTGLYRYRV GDILKVTGFH NKAPQFRFVQ RRNVVLSIDT DKTSEEDLLN AVTQAKLNHL QHPSSLLLTE YTSYADTSSI PGHYVLFWEL
501: KPRHSNDPPK LDDKTMEDCC SEVEDCLDYV YRRCRNRDKS IGPLEIRVVS LGTFDSLMDF CVSQGSSLNQ YKTPRCVKSG GALEILDSRV IGRFFSKRVP
601: QWEPLGLDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)