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AT5G14650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4562 Blast hits to 4542 proteins in 626 species: Archae - 6; Bacteria - 1470; Metazoa - 14; Fungi - 1443; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G14650-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IIXY
EMBL:AL163792EMBL:CP002688EnsemblPlants:AT5G14650EnsemblPlants:AT5G14650.1
entrez:831317Gene3D:2.160.20.10GeneID:831317GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0016829GO:GO:0071555
Gramene:AT5G14650.1hmmpanther:PTHR31375hmmpanther:PTHR31375:SF34HOGENOM:HOG000237792
InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334
KEGG:ath:AT5G14650KO:K01184OMA:KEPIYFAPfam:PF00295
PhylomeDB:Q9LYJ5PIR:T48638Proteomes:UP000006548RefSeq:NP_196969.1
SMART:SM00710SMR:Q9LYJ5STRING:3702.AT5G14650.1SUPFAM:SSF51126
TAIR:AT5G14650UniGene:At.31902UniProt:Q9LYJ5
Coordinates (TAIR10) chr5:+:4724509..4726328
Molecular Weight (calculated) 46483.30 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.15
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MCRLTLKCLS LNFLLLISLF SSRFGTCDAR YSVYWKGNRR SIAEGGSSGT INVLDHGAKG DGTSDDTKAF EDAWQVACKV AASTLLVPSG STFLVGPVSF
101: LGKECKEKIV FQLEGKIIAP TSASAWGSGL LQWIEFKALQ GITIKGKGII DGRGSVWWND MMGTKMPRTK PTALRFYGSN GVTVSGITIQ NSPQTHLKFD
201: NCISIQVSDF TTSSPGDSPN TDGIHLQNSQ DAVIYRSTLA CGDDCISIQT GCSNINIHDV DCGPGHGISI GGLGKDNTKA CVSNITVRDV TMHETTNGVR
301: IKSWQGGSGS VKQVMFSNIQ VSNVANPIII DQYYCDGGGC HNETSAVAVS NINYINIKGT YTKEPVRFAC SDSLPCTGIS LSTIELKPAT GKASSLDPFC
401: WKAHGELKTK TLPPIQCLKT EKSPEAASRS NNDAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)