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AT2G28350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 10
Curator
Summary (TAIR10)
Involved in root cap cell differentiation.
Computational
Description (TAIR10)
auxin response factor 10 (ARF10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, miRNA binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 16 (TAIR:AT4G30080.1); Has 1499 Blast hits to 1393 proteins in 79 species: Archae - 0; Bacteria - 4; Metazoa - 43; Fungi - 0; Plants - 1444; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:2732eggNOG:ENOG410IGAYeggNOG:ENOG410ZZ2CEMBL:AC006283
EMBL:AF099735EMBL:AF325073EMBL:AF336919EMBL:AK228534
EMBL:CP002685EMBL:EU550097EMBL:EU550098EMBL:EU550099
EMBL:EU550100EMBL:EU550101EMBL:EU550102EMBL:EU550103
EMBL:EU550104EMBL:EU550105EMBL:EU550106EMBL:EU550107
EMBL:EU550108EMBL:EU550109EMBL:EU550110EMBL:EU550111
EMBL:EU550112EMBL:EU550113EMBL:EU550114EMBL:EU550115
EMBL:EU550116EMBL:EU550117EMBL:EU550118EMBL:EU550119
EnsemblPlants:AT2G28350EnsemblPlants:AT2G28350.1entrez:817382ExpressionAtlas:Q9SKN5
Gene3D:2.40.330.10GeneID:817382Genevisible:Q9SKN5GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007389
GO:GO:0009734GO:GO:0009738GO:GO:0009743GO:GO:0010154
GO:GO:0031540GO:GO:0035198GO:GO:0048366GO:GO:0048441
GO:GO:0048442GO:GO:0048589GO:GO:0048829GO:GO:0051301
Gramene:AT2G28350.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF27InParanoid:Q9SKN5
IntAct:Q9SKN5InterPro:IPR000270InterPro:IPR003340InterPro:IPR010525
InterPro:IPR015300KEGG:ath:AT2G28350ncoils:CoilOMA:NTSENGM
PaxDb:Q9SKN5Pfam:PF02362Pfam:PF06507Pfam:Q9SKN5
Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9SKN5PIR:G84683
PRIDE:Q9SKN5PRO:PR:Q9SKN5PROSITE:PS50863PROSITE:PS51745
ProteinModelPortal:Q9SKN5Proteomes:UP000006548RefSeq:NP_180402.1SMART:SM01019
SMR:Q9SKN5STRING:3702.AT2G28350.1SUPFAM:SSF101936TAIR:AT2G28350
tair10-symbols:ARF10UniGene:At.13730UniProt:C0SV66UniProt:Q9SKN5
Coordinates (TAIR10) chr2:+:12114331..12116665
Molecular Weight (calculated) 76725.10 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.38
Length 693 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)