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AT4G30080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 16
Curator
Summary (TAIR10)
Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.
Computational
Description (TAIR10)
auxin response factor 16 (ARF16); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 10 (TAIR:AT2G28350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14418eggNOG:ENOG410IGAYeggNOG:ENOG410ZZ2CEMBL:AL078464
EMBL:AL161576EMBL:AY059792EMBL:AY091198EMBL:CP002687
EMBL:EU550120EMBL:EU550121EMBL:EU550122EMBL:EU550123
EMBL:EU550124EMBL:EU550125EMBL:EU550126EMBL:EU550127
EMBL:EU550128EMBL:EU550129EMBL:EU550130EMBL:EU550131
EMBL:EU550132EMBL:EU550133EMBL:EU550134EMBL:EU550135
EMBL:EU550136EMBL:EU550137EMBL:EU550138EMBL:EU550139
EMBL:EU550140EMBL:EU550141EMBL:EU550142EMBL:EU550143
EnsemblPlants:AT4G30080EnsemblPlants:AT4G30080.1entrez:829131Gene3D:2.40.330.10
GeneID:829131Genevisible:Q93YR9GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0007389GO:GO:0009733
GO:GO:0009734GO:GO:0035198GO:GO:0048829GO:GO:0051301
Gramene:AT4G30080.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF27HOGENOM:HOG000241141
InParanoid:Q93YR9IntAct:Q93YR9InterPro:IPR000270InterPro:IPR003340
InterPro:IPR010525InterPro:IPR015300KEGG:ath:AT4G30080OMA:NGPEYSA
PaxDb:Q93YR9Pfam:PF02362Pfam:PF06507Pfam:Q93YR9
Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q93YR9PIR:T08984
PRIDE:Q93YR9PRO:PR:Q93YR9PROSITE:PS50863PROSITE:PS51745
ProteinModelPortal:Q93YR9Proteomes:UP000006548RefSeq:NP_567841.1SMART:SM01019
SMR:Q93YR9STRING:3702.AT4G30080.1SUPFAM:SSF101936TAIR:AT4G30080
tair10-symbols:ARF16UniGene:At.3365UniProt:Q93YR9
Coordinates (TAIR10) chr4:-:14703369..14705564
Molecular Weight (calculated) 73982.80 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.41
Length 670 amino acids
Sequence (TAIR10)
(BLAST)
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)