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AT1G73410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb domain protein 54
Curator
Summary (TAIR10)
Encodes a putative transcription factor that is a member of the R2R3-MYB family.
Computational
Description (TAIR10)
myb domain protein 54 (MYB54); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 52 (TAIR:AT1G17950.1); Has 8946 Blast hits to 8042 proteins in 555 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 630; Plants - 5453; Viruses - 5; Other Eukaryotes - 1958 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC012396EMBL:AK227402
EMBL:AY519569EMBL:BT024851EMBL:CP002684EnsemblPlants:AT1G73410
EnsemblPlants:AT1G73410.1entrez:843676Gene3D:1.10.10.60GeneID:843676
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006355
GO:GO:0044212GO:GO:2000652Gramene:AT1G73410.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF665HOGENOM:HOG000237764InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT1G73410KO:K09422OMA:SHVPFFD
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9FX36PIR:G96760
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_177484.1SMART:SM00717
SMR:Q9FX36STRING:3702.AT1G73410.1SUPFAM:SSF46689TAIR:AT1G73410
tair10-symbols:ATMYB54tair10-symbols:MYB54UniGene:At.10910UniProt:Q9FX36
Coordinates (TAIR10) chr1:+:27601852..27603038
Molecular Weight (calculated) 28206.30 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.81
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)