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AT1G12890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G18560.1); Has 5243 Blast hits to 5226 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5234; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS5WeggNOG:ENOG41118QJEMBL:AB493454EMBL:AC012187
EMBL:CP002684EnsemblPlants:AT1G12890EnsemblPlants:AT1G12890.1entrez:837847
Gene3D:3.30.730.10GeneID:837847GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873Gramene:AT1G12890.1
HOGENOM:HOG000215011InParanoid:Q3E703InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G12890OMA:FTKERHWPaxDb:Q3E703Pfam:PF00847
Pfam:Q3E703Pfscan:PS51032PRINTS:PR00367PRO:PR:Q3E703
PROSITE:PS51032ProteinModelPortal:Q3E703Proteomes:UP000006548RefSeq:NP_172749.1
SMART:SM00380SMR:Q3E703STRING:3702.AT1G12890.1SUPFAM:SSF54171
TAIR:AT1G12890UniGene:At.51591UniProt:Q3E703
Coordinates (TAIR10) chr1:+:4391734..4392393
Molecular Weight (calculated) 25011.80 Da
IEP (calculated) 5.54
GRAVY (calculated) -0.81
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)