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AT2G20350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G67010.1); Has 4615 Blast hits to 4613 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4610; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT74eggNOG:ENOG411084KEMBL:AC006569EMBL:AY560881
EMBL:BT024698EMBL:CP002685EnsemblPlants:AT2G20350EnsemblPlants:AT2G20350.1
entrez:816554Gene3D:3.30.730.10GeneID:816554Genevisible:Q9SK67
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873Gramene:AT2G20350.1hmmpanther:PTHR31194hmmpanther:PTHR31194:SF0
HOGENOM:HOG000112333InParanoid:Q9SK67InterPro:IPR001471InterPro:IPR016177
InterPro:IPR017392iPTMnet:Q9SK67KEGG:ath:AT2G20350OMA:CVFPRHE
PANTHER:PTHR31194PaxDb:Q9SK67Pfam:Q9SK67Pfscan:PS51032
PhylomeDB:Q9SK67PIR:B84588PRINTS:PR00367PRO:PR:Q9SK67
PROSITE:PS51032ProteinModelPortal:Q9SK67Proteomes:UP000006548RefSeq:NP_179625.1
SMART:SM00380SMR:Q9SK67SUPFAM:SSF54171TAIR:AT2G20350
UniGene:At.50667UniProt:Q9SK67
Coordinates (TAIR10) chr2:+:8784769..8785396
Molecular Weight (calculated) 17461.60 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.73
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSENVPSY DQNINFTPNL TRDQEHVIMV SALQQVISNV GGDTNSNAWE ADLPPLNAGP CPLCSVTGCY GCVFPRHEAI IKKEKKHKGV RKKPSGKWAA
101: EIWDPSLKVR RWLGTFPTAE MAAKAYNDAA AEFVGRRSAR RGTKNGEEAS TKKTTEKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)