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AT5G49890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:8969232 (1996): unclear
  • PMID:20430762 (2010): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chloride channel C
Curator
Summary (TAIR10)
member of Anion channel protein family
Computational
Description (TAIR10)
chloride channel C (CLC-C); FUNCTIONS IN: anion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: plant-type vacuole membrane, intracellular, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel ClC-plant (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: Voltage-gated chloride channel family protein (TAIR:AT5G33280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20298eggNOG:COG0038eggNOG:KOG0474EMBL:AB024032
EMBL:AY120754EMBL:BT001211EMBL:CP002688EMBL:Y09095
EMBL:Z71447EnsemblPlants:AT5G49890EnsemblPlants:AT5G49890.1entrez:835052
Gene3D:1.10.3080.10GeneID:835052Genevisible:Q96282GO:GO:0005247
GO:GO:0005774GO:GO:0009705GO:GO:0034707Gramene:AT5G49890.1
hmmpanther:PTHR11689hmmpanther:PTHR11689:SF91HOGENOM:HOG000231081InParanoid:Q96282
InterPro:IPR000644InterPro:IPR001807InterPro:IPR002251InterPro:IPR014743
iPTMnet:Q96282KEGG:ath:AT5G49890KO:K05016OMA:TNDLPML
PaxDb:Q96282Pfam:PF00571Pfam:PF00654Pfam:Q96282
Pfscan:PS51371PhylomeDB:Q96282PRIDE:Q96282PRINTS:PR00762
PRINTS:PR01120PRO:PR:Q96282PROSITE:PS51371ProteinModelPortal:Q96282
Proteomes:UP000006548Reactome:R-ATH-2672351RefSeq:NP_199800.1SMART:SM00116
SMR:Q96282STRING:3702.AT5G49890.1SUPFAM:SSF54631SUPFAM:SSF81340
TAIR:AT5G49890tair10-symbols:ATCLC-Ctair10-symbols:CLC-CTMHMM:TMhelix
UniGene:At.16UniProt:Q96282
Coordinates (TAIR10) chr5:-:20288489..20292143
Molecular Weight (calculated) 85236.90 Da
IEP (calculated) 8.46
GRAVY (calculated) 0.35
Length 779 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)