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AT2G44930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF247)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT2G28580.1); Has 1033 Blast hits to 968 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1031; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBCZeggNOG:ENOG4111CHWEMBL:AC002388EMBL:AY056199
EMBL:AY096628EMBL:CP002685EnsemblPlants:AT2G44930EnsemblPlants:AT2G44930.1
entrez:819102GeneID:819102GO:GO:0016021Gramene:AT2G44930.1
hmmpanther:PTHR31170HOGENOM:HOG000237813InterPro:IPR004158KEGG:ath:AT2G44930
OMA:DNTERIMPfam:PF03140PhylomeDB:O22159PIR:T00400
Proteomes:UP000006548RefSeq:NP_566032.1TAIR:AT2G44930TMHMM:TMhelix
UniGene:At.26361UniProt:O22159
Coordinates (TAIR10) chr2:-:18529700..18531671
Molecular Weight (calculated) 59212.70 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.26
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEKQPLME DLEQGIQLST RENETGSGKV GRWSEGFRDP LVSKHGTAEK AKIVSVTTKP YKPDSCYESE ISGIWPSSFS KEYCCIYRVP NRLRRVNPEA
101: YTPQMLLIGP LQHSKKANAL ELSKTDLRYL DYMNMELHKK KYLNAIANKY GDQIIEVFKE IIETSEKFVR ESYAESTDWI KPQDFVDMIL LDSVFILGVF
201: IQAETTQNIK KKEEILFHEE DIIFQEPCLI TTILEDLILL ENQLPYVLLE KLSKPFFANL KTKETFRDII LRAFRLKGEI KEGTNFRHFT DLFRRVRVET
301: LCLTKEQIKS AKDKPPEIIK SLHNADKLDS AGVDFVRLER KNDLSLVITF ERGILEIPCF LADDNTERIM RNLMALEQCH YPLTAYVCNY IAFLDFLIDT
401: DQDVDLLVKK GVIKNWLGHQ ASVAEMVNKL CLGLVDFGSH YYGIADRLNK HYESRRNRSI ATLRRVYFKD LWTGTATIAA AVILVLTLIG TVASVLQVTQ
501: KDNNSPPPPA MFRGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)