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AT3G22200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22430844 (2012): Golgi
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Curator
Summary (TAIR10)
Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.
Computational
Description (TAIR10)
POLLEN-PISTIL INCOMPATIBILITY 2 (POP2); FUNCTIONS IN: 4-aminobutyrate:pyruvate transaminase activity, cobalt ion binding, 4-aminobutyrate transaminase activity, zinc ion binding; INVOLVED IN: in 11 processes; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 1 (TAIR:AT1G80600.1); Has 35485 Blast hits to 35478 proteins in 2746 species: Archae - 740; Bacteria - 23053; Metazoa - 633; Fungi - 902; Plants - 413; Viruses - 17; Other Eukaryotes - 9727 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-659-MONOMERBioCyc:MetaCyc:AT3G22200-LER-MONOMERBioGrid:7116BRENDA:2.6.1.19
BRENDA:2.6.1.96EC:2.6.1.96eggNOG:COG0161eggNOG:ENOG410IR3Y
EMBL:AF351125EMBL:AK317625EMBL:AP001306EMBL:AY034923
EMBL:AY142571EMBL:CP002686EnsemblPlants:AT3G22200EnsemblPlants:AT3G22200.1
entrez:821784Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:821784
Genevisible:Q94CE5GO:GO:0003867GO:GO:0005739GO:GO:0030170
gramene_plant_reactome:1119610gramene_plant_reactome:6873929hmmpanther:PTHR11986hmmpanther:PTHR11986:SF90
HOGENOM:HOG000020207InterPro:IPR005814InterPro:IPR015421InterPro:IPR015422
InterPro:IPR015424KEGG:ath:AT3G22200KO:K16871ncoils:Coil
OMA:REGLNQHPANTHER:PTHR11986PaxDb:Q94CE5Pfam:PF00202
Pfam:Q94CE5PhylomeDB:Q94CE5PIRSF:PIRSF000521PRIDE:Q94CE5
PRO:PR:Q94CE5PROSITE:PS00600ProteinModelPortal:Q94CE5Proteomes:UP000006548
RefSeq:NP_001189947.1RefSeq:NP_566700.1scanprosite:PS00600SMR:Q94CE5
STRING:3702.AT3G22200.2SUPFAM:SSF53383TAIR:AT3G22200tair10-symbols:GABA-T
tair10-symbols:HER1tair10-symbols:POP2UniGene:At.22661UniGene:At.48693
UniProt:Q94CE5
Coordinates (TAIR10) chr3:+:7835286..7838863
Molecular Weight (calculated) 55190.50 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.12
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVINSLRRL ARTTQVHLHS KYATCMSGNS TSRRIFTTEA APEKKNTVGS KGHDMLAPFT AGWQSADLDP LVIAKSEGSY VYDDTGKKYL DSLAGLWCTA
101: LGGNEPRLVS AAVEQLNTLP FYHSFWNRTT KPSLDLAKVL LEMFTANKMA KAFFTSGGSD ANDTQVKLVW YYNNALGRPE KKKFIARKKS YHGSTLISAS
201: LSGLPPLHQN FDLPAPFVLH TDCPHYWRFH LPGETEEEFS TRLAKNLEDL IIKEGPETIG AFIAEPVMGA GGVIPPPATY FEKVQAVVKK YDILFIADEV
301: ICAFGRLGTM FGCDKYNIKP DLVTLAKALS SAYMPIGAIL MSQEVADVIN SHSSKLGVFS HGFTYSGHPV SCAVAIEALK IYKERNIPEY VAKVAPRFQD
401: GVKAFASGSP IIGETRGTGL ILGTEFVDNK SPNEPFPPEW GVGAFFGAEC QKHGMLVRVA GDGILMSPPL IISPEEIDEL ISIYGKALKA TEEKVKELKA
501: QHKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)