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AT3G12560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRF-like 9
Curator
Summary (TAIR10)
Encodes a telomeric DNA-binding protein.
Computational
Description (TAIR10)
TRF-like 9 (TRFL9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: telomeric DNA binding protein 1 (TAIR:AT5G13820.1); Has 334 Blast hits to 327 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 306; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:5770eggNOG:ENOG410IGAWeggNOG:ENOG4111C5TEMBL:AC069474
EMBL:AK227790EMBL:AP002055EMBL:AY181997EMBL:AY550302
EMBL:BT006452EMBL:CP002686EnsemblPlants:AT3G12560EnsemblPlants:AT3G12560.1
entrez:820436Gene3D:1.10.10.60GeneID:820436Genevisible:Q9C7B1
GO:GO:0000783GO:GO:0003691GO:GO:0006351GO:GO:0006355
GO:GO:0008301GO:GO:0009737GO:GO:0042162Gramene:AT3G12560.1
hmmpanther:PTHR21717hmmpanther:PTHR21717:SF9HOGENOM:HOG000239616InParanoid:Q9C7B1
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930InterPro:IPR029071
KEGG:ath:AT3G12560OMA:GKHQARGPaxDb:Q9C7B1Pfam:Q9C7B1
Pfscan:PS51294PhylomeDB:Q9C7B1PRIDE:Q9C7B1PRO:PR:Q9C7B1
PROSITE:PS51294ProteinModelPortal:Q9C7B1Proteomes:UP000006548RefSeq:NP_187862.1
SMART:SM00717SMR:Q9C7B1STRING:3702.AT3G12560.1SUPFAM:SSF46689
SUPFAM:SSF54236TAIR:AT3G12560tair10-symbols:ATTBP2tair10-symbols:TRFL9
UniGene:At.39576UniProt:Q9C7B1
Coordinates (TAIR10) chr3:-:3982272..3984848
Molecular Weight (calculated) 68762.20 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.64
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)