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AT1G33360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At1g33360-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At1g33360-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (mitochondrial marker)

At1g33360-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent Clp protease
Curator
Summary (TAIR10)
Encodes ClpX3, a subunit of the Clp protease complex.
Computational
Description (TAIR10)
ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: CLP protease regulatory subunit X (TAIR:AT5G53350.1); Has 27211 Blast hits to 23373 proteins in 3012 species: Archae - 715; Bacteria - 14972; Metazoa - 1896; Fungi - 1201; Plants - 919; Viruses - 6; Other Eukaryotes - 7502 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G33360-MONOMEReggNOG:COG1219eggNOG:KOG0745EMBL:AC027035
EMBL:AC051630EMBL:BT015363EMBL:BT015893EMBL:CP002684
EnsemblPlants:AT1G33360EnsemblPlants:AT1G33360.1entrez:840230Gene3D:3.40.50.300
GeneID:840230Genevisible:Q66GN9GO:GO:0005524GO:GO:0005739
GO:GO:0006457GO:GO:0008233Gramene:AT1G33360.1hmmpanther:PTHR11262
hmmpanther:PTHR11262:SF4HOGENOM:HOG000010093InterPro:IPR003593InterPro:IPR003959
InterPro:IPR004487InterPro:IPR019489InterPro:IPR027417iPTMnet:Q66GN9
KEGG:ath:AT1G33360KO:K03544OMA:KEICKWLPaxDb:Q66GN9
Pfam:PF07724Pfam:PF10431PhylomeDB:Q66GN9PIR:D86457
PRO:PR:Q66GN9ProteinModelPortal:Q66GN9Proteomes:UP000006548RefSeq:NP_564423.3
SMART:SM00382SMART:SM01086SMR:Q66GN9STRING:3702.AT1G33360.1
SUPFAM:SSF52540TAIR:AT1G33360TIGRfam:TIGR00382TIGRFAMs:TIGR00382
UniGene:At.39953UniProt:Q66GN9
Coordinates (TAIR10) chr1:+:12092111..12095789
Molecular Weight (calculated) 71544.10 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.41
Length 656 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGLWRLRNL KSLALHARSI SPVSNLYSLE LGSCPRRRIQ ERFKSEQGGG GGGGDDFPVP VTRRKLRAEP NCPRCSKQMD LLFSNRQFPS SNLLQRPDDS
101: DSSGAGDKTN FQSVNFCPTC KTAYGFNPRG VSPLQGTFIE IGRVQSPTTT TTNATTSKST RKQQQHSKDP NQGFNYRNKL RSSFWDTLRS YGAEPPEDWS
201: PPPPHSPLNS SPPNTIPVNA SPSAVDTSPL PDAVNDVSRW GGAGLGRDFP TPKEICKWLD KFVIGQSRAK KVLSVAVYNH YKRIYHTSMK KGSAAQPIDD
301: DDNVELDKSN VLLMGPTGSG KTLLAKTLAR LVNVPFVIAD ATTLTQAGYV GDDVESILHK LLTVAEFNVQ AAQQGIVYID EVDKITKKAE SLNISRDVSG
401: EGVQQALLKL LEGTIVNVPG KGARKHPRGD HIQIDTKDIL FICGGAFVDL EKTIVDRRQD SSIGFGAPVR ANMATSGVTS GAITSSLLES VESADLTAYG
501: LIPEFVGRFP ILVSLSALTE DQLIRVLVEP KNALGKQYKK LFSMNNVKLH FTEKALEIIS KQAMVKNTGA RGLRALLESI LTEAMFEIPD DKKGDERIDA
601: VIVDEESTSS EASRGCTAKI LRGDGAFERY LSENKSKDAT EPMVDERVGS AKAMRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)