AT4G38230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : calcium-dependent protein kinase 26 | ||||||||||||
| Curator Summary (TAIR10) |
member of Calcium Dependent Protein Kinase | ||||||||||||
| Computational Description (TAIR10) |
calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1); Has 94022 Blast hits to 87051 proteins in 3195 species: Archae - 49; Bacteria - 6802; Metazoa - 37554; Fungi - 14737; Plants - 17453; Viruses - 106; Other Eukaryotes - 17321 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17928994..17930486 | ||||||||||||
| Molecular Weight (calculated) | 38206.60 Da | ||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||
| Length | 340 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHRDLKPENF LLVNKDDDFS LKAIDFGLSV FFKPGQIFED VVGSPYYVAP EVLLKHYGPE ADVWTAGVIL YILVSGVPPF WAETQQGIFD AVLKGHIDFD 101: SDPWPLISDS AKNLIRGMLC SRPSERLTAH QVLRHPWICE NGVAPDRALD PAVLSRLKQF SAMNKLKQMA LRVIAESLSE EEIAGLKEMF KAMDTDNSGA 201: ITFDELKAGL RRYGSTLKDT EIRDLMEAAD IDKSGTIDYG EFIAATIHLN KLEREEHLLS AFRYFDKDGS GYITIDELQH ACAEQGMSDV FLEDVIKEVD 301: QDNDGRIDYG EFVAMMQKGI VGRTMRKSIN MSIRNNAVSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)