AT2G24300.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.997 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Calmodulin-binding protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G31000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:+:10341431..10343457 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62688.10 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.28 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||
Length | 552 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVWTNTQVSE EVERALSRLG NAKLTSRSPE PKRIQDRNGR NLQLHFRTRM PPHLFTGGKV EGERGSAIHV VLIDANTGNV VQTGEESASK LNVVVLEGDF 101: NDEDDEDWTR EHFESFEVKE REGKRPILTG DTQIVLKEGV GTLGELTFTD NSSWIRSRKF RLGVKPASGY GDSFCIREAK TEPFAVKDHR GELYKKHYPP 201: AVHDEVWRLD RIAKDGVLHK KLLKANIVTV EDFLRLLVKD PQKLRNLLGS GMSNRMWENT VEHAKTCVLG GKLYVFYTDQ THATGVVFNH IYEFRGLITN 301: GQFLSLESLN HDQKISADIL VKLAYENWHK AIEYDGKLLN CLPVAEKEIK SLLEPKMVSA QTAPNHQQLH NQNNRQTVQG HQNAITYSPV PQPIDYPQFA 401: QQHCNQLLPS FPCNVQDYNR SMESSNDSSS YNGEDWCPPR AAGQGLEDIF SEEIRLRSSE MLETDDMQRL LKTFGIGVNT VGTQGGFGQT DESCYGYSIP 501: YQAQIDNTYR RERNRGSGKA VVGWLKLKAA LRWGIFIRKK AAERRPQIVE ID |
||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)