AT3G13782.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleosome assembly protein1;4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleosome assembly protein1;4 (NAP1;4); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: response to cadmium ion, nucleosome assembly, nucleotide-excision repair; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;2 (TAIR:AT2G19480.3); Has 1671 Blast hits to 1646 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1036; Fungi - 206; Plants - 209; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4526660..4528398 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36419.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.27 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||
| Length | 317 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNEENIKSD NKSGDSSDLP TIPALDIGAE ECDLLAELKN LTLKRPFDVK KLSPKVTKRV LFLKDIQVTH DELEEKFLAE KSALEATYDN LYKPLFAKRY 101: EIVNGVVEAE AEKEGVPNFW LIAMKTNEML ANEITERDEA ALKYLKDIRS CRVEDTSRNF KLEFLFDSNL YFKNSVLSKT YHVNDEDGPV LEKVIGTDIE 201: WFPGKCLTHK VVVKKKTKKG PKKVNNIPMT KTENCESFFN FFKPPEIPEI DEVDDYDDFD TIMTEELQNL MDQDYDIAVT IRDKLIPHAV SWFTGEALVD 301: EDDSDDNDDD DNDEKSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)