AT5G62310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
INCOMPLETE ROOT HAIR ELONGATION (IRE); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17850.1); Has 126848 Blast hits to 125224 proteins in 4803 species: Archae - 165; Bacteria - 15038; Metazoa - 47504; Fungi - 12892; Plants - 29759; Viruses - 507; Other Eukaryotes - 20983 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25023405..25028414 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 130154.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1168 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSTTEPSPEN DRDPQPTTIS TPTSTNAKLL KKIPAIPFRH SDKEGEDEQA KTDEVTTELA GEGPMSHDSP EILAPSSLGL NHIRTKSSPA PSPLRFSSAT 0101: PLISPGQDDK DVAKEKPRVG VVDARADARA RWPIPPHQPD QGKKVQWSQS KSQRVPANSN PGVESTHVGL AKETQSPRFQ AILRVTSGRK KKAHDIKSFS 0201: HELNSKGVRP FPVWRSRAVG HMEEIMAAIR TKFDKQKEDV DADLGVFAGY LVTTLESTPE SNKELRVGLE DLLVEARQCA TMPASEFWLK CEGIVQKLDD 0301: KRQELPMGGL KQAHNRLLFI LTRCNRLVQF RKESGYVEEH ILGMHQLSDL GVYPEQMVEI SRQQDLLREK EIQKINEKQN LAGKQDDQNS NSGADGVEVN 0401: TARSTDSTSS NFRMSSWKKL PSAAEKNRSL NNTPKAKGES KIQPKVYGDE NAENLHSPSG QPASADRSAL WGFWADHQCV TYDNSMICRI CEVEIPVVHV 0501: EEHSRICTIA DRCDLKGINV NLRLERVAES LEKILESWTP KSSVTPRAVA DSARLSNSSR QEDLDEISQR CSDDMLDCVP RSQNTFSLDE LNILNEMSMT 0601: NGTKDSSAGS LTPPSPATPR NSQVDLLLSG RKTISELENY QQINKLLDIA RSVANVNVCG YSSLDFMIEQ LDELKYVIQD RKADALVVET FGRRIEKLLQ 0701: EKYIELCGLI DDEKVDSSNA MPDEESSADE DTVRSLRASP LNPRAKDRTS IEDFEIIKPI SRGAFGRVFL AKKRATGDLF AIKVLKKADM IRKNAVESIL 0801: AERNILISVR NPFVVRFFYS FTCRENLYLV MEYLNGGDLF SLLRNLGCLD EDMARIYIAE VVLALEYLHS VNIIHRDLKP DNLLINQDGH IKLTDFGLSK 0901: VGLINSTDDL SGESSLGNSG FFAEDGSKAQ HSQGKDSRKK HAVVGTPDYL APEILLGMGH GKTADWWSVG VILFEVLVGI PPFNAETPQQ IFENIINRDI 1001: PWPNVPEEIS YEAHDLINKL LTENPVQRLG ATGAGEVKQH HFFKDINWDT LARQKAMFVP SAEPQDTSYF MSRYIWNPED ENVHGGSDFD DLTDTCSSSS 1101: FNTQEEDGDE CGSLAEFGNG PNLAVKYSFS NFSFKNLSQL ASINYDLVLK NAKESVEASN QSAPRPET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)