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AT1G74510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G02870.3); Has 7938 Blast hits to 4441 proteins in 274 species: Archae - 4; Bacteria - 392; Metazoa - 6058; Fungi - 35; Plants - 1067; Viruses - 39; Other Eukaryotes - 343 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC011765EMBL:AK228375
EMBL:BT005714EMBL:BT006071EMBL:CP002684EnsemblPlants:AT1G74510
EnsemblPlants:AT1G74510.1EnsemblPlants:AT1G74510.2entrez:843792Gene3D:2.130.10.80
GeneID:843792Genevisible:Q9CA63GO:GO:0005634Gramene:AT1G74510.1
Gramene:AT1G74510.2hmmpanther:PTHR24413hmmpanther:PTHR24413:SF133HOGENOM:HOG000239488
InParanoid:Q9CA63InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916
KEGG:ath:AT1G74510OMA:CEEESKWPaxDb:Q9CA63Pfam:PF00646
Pfam:PF01344Pfam:Q9CA63PhylomeDB:Q9CA63PIR:B96774
PRIDE:Q9CA63PRO:PR:Q9CA63ProteinModelPortal:Q9CA63Proteomes:UP000006548
RefSeq:NP_177591.1RefSeq:NP_849884.1SMART:SM00612SMR:Q9CA63
STRING:3702.AT1G74510.1SUPFAM:0052715SUPFAM:SSF81383TAIR:AT1G74510
UniGene:At.22567UniProt:Q9CA63
Coordinates (TAIR10) chr1:+:28006065..28007420
Molecular Weight (calculated) 49650.30 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.26
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEAPSYLVS RDLPSSCEEE SKWIYNAHCV LQLSLRKRLL DDTDVEGSSA KKMLRVDHGS RGESDKITDS LQLAKTYQSS NQSQQGGGGD QQSSPVTRLD
101: QNALLNCLAH CSLSDFGSIA STNRTFRSLI KDSELYRLRR AKGIVEHWIY FSCRLLEWEA YDPNGDRWLR VPKMTFNECF MCSDKESLAV GTELLVFGKE
201: IMSHVIYRYS ILTNTWTSGM QMNVPRCLFG SASLGEIAVI AGGCDPRGRI LSSAELYNSE TGEWTVIPSM NKARKMCSSV FMDGNFYCIG GIGEGNSKML
301: LCGEVYDLKK KTWTLIPNML PERSSGGGGD QAKEIAAATA ASEAPPLVAV VKDELYAANY AQQEVKKYDK RLNVWNKVGN LPERASSMNG WGMAFRACGD
401: QLVVVGGPRA IGGGFIEINA CVPSEGTQLH WRVLASKPSG NFVYNCAVMG C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)