AT4G39390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleotide sugar transporter-KT 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a golgi localized nucleotide sugar transporter. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nucleotide sugar transporter-KT 1 (NST-K1); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity; INVOLVED IN: nucleotide-sugar transport; LOCATED IN: Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G09810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18316278..18317854 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37126.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 337 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFKKMSATTS KTDQKAALDI ASWLFNVVTS VGIILVNKAL MATYGFSFAT TLTGLHFGTT TLLTTFLTWL GYIQPSQLPW PDLLKFVLFA NFSIVGMNVS 101: LMWNSVGFYQ IAKLSMIPVS CLLEVMLDNV RYSRDTKLSI LLVLAGVAVC TVTDVSVNLN GFLAAAIAVW STALQQYYVH YLQRKYSLGS FNLLAHTAPV 201: QAASLLLVGP FLDYWLTNQR VDAYNFSFVS LFFLILSCSI AVGTNLSQFI CIGRFTAVSF QVLGHMKTIL VLVLGFTFFG KEGLNLQVVL GMLIAILGMI 301: WYGNASSKPG GKERRSLSIP ITKSQKLSET NESDEKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)