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AT4G39390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25053812 (2014): Golgi Golgi apparatus
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleotide sugar transporter-KT 1
Curator
Summary (TAIR10)
Encodes a golgi localized nucleotide sugar transporter.
Computational
Description (TAIR10)
nucleotide sugar transporter-KT 1 (NST-K1); FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity; INVOLVED IN: nucleotide-sugar transport; LOCATED IN: Golgi membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G09810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AY091057EMBL:AY142535
EMBL:CP002687EMBL:KJ667160EMBL:KP872771EnsemblPlants:AT4G39390
EnsemblPlants:AT4G39390.1EnsemblPlants:AT4G39390.2entrez:830094ExpressionAtlas:Q8RWW7
GeneID:830094GO:GO:0000139GO:GO:0005338GO:GO:0005794
GO:GO:0008643GO:GO:0015780GO:GO:0016021GO:GO:0022857
GO:GO:0055085GO:GO:1901679Gramene:AT4G39390.1Gramene:AT4G39390.2
hmmpanther:PTHR11132hmmpanther:PTHR11132:SF73InterPro:IPR004853InterPro:IPR031089
OMA:QRVDAYNPANTHER:PTHR11132:SF73Pfam:PF03151PhylomeDB:Q8RWW7
Proteomes:UP000006548RefSeq:NP_568059.1RefSeq:NP_849527.1STRING:3702.AT4G39390.1
TAIR:AT4G39390tair10-symbols:ATNST-KT1tair10-symbols:NST-K1TMHMM:TMhelix
UniGene:At.27447UniGene:At.31097UniProt:Q8RWW7
Coordinates (TAIR10) chr4:+:18316278..18317854
Molecular Weight (calculated) 37126.80 Da
IEP (calculated) 9.57
GRAVY (calculated) 0.60
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKKMSATTS KTDQKAALDI ASWLFNVVTS VGIILVNKAL MATYGFSFAT TLTGLHFGTT TLLTTFLTWL GYIQPSQLPW PDLLKFVLFA NFSIVGMNVS
101: LMWNSVGFYQ IAKLSMIPVS CLLEVMLDNV RYSRDTKLSI LLVLAGVAVC TVTDVSVNLN GFLAAAIAVW STALQQYYVH YLQRKYSLGS FNLLAHTAPV
201: QAASLLLVGP FLDYWLTNQR VDAYNFSFVS LFFLILSCSI AVGTNLSQFI CIGRFTAVSF QVLGHMKTIL VLVLGFTFFG KEGLNLQVVL GMLIAILGMI
301: WYGNASSKPG GKERRSLSIP ITKSQKLSET NESDEKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)