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AT4G01840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16984403 (2006): plant-type vacuole
  • PMID:26748395 (2016): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ca2+ activated outward rectifying K+ channel 5
Curator
Summary (TAIR10)
Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.
Computational
Description (TAIR10)
Ca2+ activated outward rectifying K+ channel 5 (KCO5); FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 6 (TAIR:AT4G18160.1); Has 4836 Blast hits to 4447 proteins in 1041 species: Archae - 139; Bacteria - 2196; Metazoa - 1258; Fungi - 189; Plants - 266; Viruses - 0; Other Eukaryotes - 788 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1758-MONOMERBioGrid:13382eggNOG:COG1226eggNOG:KOG1418
EMBL:AC007138EMBL:AJ243456EMBL:AL161493EMBL:AY084857
EMBL:CP002687EnsemblPlants:AT4G01840EnsemblPlants:AT4G01840.1entrez:828091
GeneID:828091Genevisible:Q9S6Z8GO:GO:0005267GO:GO:0009705
GO:GO:0016021GO:GO:0046872Gramene:AT4G01840.1hmmpanther:PTHR11003
hmmpanther:PTHR11003:SF146HOGENOM:HOG000238193InParanoid:Q9S6Z8InterPro:IPR003280
InterPro:IPR013099KEGG:ath:AT4G01840KO:K05389OMA:HRRITNW
PaxDb:Q9S6Z8Pfam:PF07885Pfam:Q9S6Z8PhylomeDB:Q9S6Z8
PIR:F85023PRIDE:Q9S6Z8PRINTS:PR01333PRO:PR:Q9S6Z8
ProteinModelPortal:Q9S6Z8Proteomes:UP000006548RefSeq:NP_192093.1SMR:Q9S6Z8
STRING:3702.AT4G01840.1SUPFAM:SSF81324TAIR:AT4G01840tair10-symbols:ATKCO5
tair10-symbols:ATTPK5tair10-symbols:KCO5tair10-symbols:TPK5TCDB:1.A.1.7.5
TMHMM:TMhelixUniGene:At.585UniGene:At.66593UniProt:Q9S6Z8
Coordinates (TAIR10) chr4:+:793403..794933
Molecular Weight (calculated) 46261.40 Da
IEP (calculated) 7.99
GRAVY (calculated) 0.04
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPLISPQPR FRLQPIPENP SSSSSSASIT IPRSISNTSF FHEISQERLL LHHQDLEQSV QDDKEDQDSD SDETNRFLSQ TRPLHRSRTA PAMVIIKDLR
101: TKPPETKKPS PVSKSIIRQA IFLLIVYLTL GVSIYSFNRD HYSGIETHPV VDALYFCIVT MCTIGYGDIA PLTPWTKIFA VVFVLFGFGF LDILLSGVVN
201: YVLDLQESMI LTGIQTRQHH QHHHHHRFSA KDYIIDFEKG RMRIRMKVCL ALCVVVLCIG VGALVLHFVE ELGFVDSVYL SVMSVTTVGY GDRAFKTLQG
301: RLFAAVWLLV STLAVARAFL YLAEARIDRR HRKAVKLALN REITVDDLLK ADTYQHGFIS KSEYIVLKLK EMGKITQKDI DQVVIQFEKL DPNQIGKITL
401: PDLLGDPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)