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AT4G27260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive GH3 family protein
Curator
Summary (TAIR10)
encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
Computational
Description (TAIR10)
WES1; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G27260-MONOMERBioCyc:MetaCyc:AT4G27260-MONOMERBioGrid:14121EC:6.3.2.-
eggNOG:ENOG410IHQ2eggNOG:ENOG410XT6VEMBL:AL030978EMBL:AL161566
EMBL:AY070038EMBL:AY096516EMBL:CP002687EnsemblPlants:AT4G27260
EnsemblPlants:AT4G27260.1entrez:828834ExpressionAtlas:O81829GeneID:828834
Genevisible:O81829GO:GO:0009733GO:GO:0010120GO:GO:0010252
GO:GO:0010279GO:GO:1901183Gramene:AT4G27260.1gramene_pathway:6.3.-.-
gramene_pathway:PWY-2021gramene_pathway:PWY-6219hmmpanther:PTHR31901hmmpanther:PTHR31901:SF2
HOGENOM:HOG000238302InParanoid:O81829InterPro:IPR004993KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT4G27260KO:K14487
MINT:MINT-8061546ncoils:CoilOMA:YTAYTSPPANTHER:PTHR31901
PaxDb:O81829PaxDb:Q0GUM1Pfam:O81829Pfam:PF03321
PhylomeDB:O81829PIR:T05750PRIDE:O81829PRO:PR:O81829
ProteinModelPortal:O81829Proteomes:UP000006548RefSeq:NP_194456.1SMR:O81829
STRING:3702.AT4G27260.1TAIR:AT4G27260tair10-symbols:GH3.5tair10-symbols:WES1
UniGene:At.2338UniGene:At.67571UniProt:O81829UniProt:Q0GUM1
Coordinates (TAIR10) chr4:+:13653704..13655892
Molecular Weight (calculated) 69287.10 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.26
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MPEAPKKESL EVFDLTLDQK NKQKLQLIEE LTSNADQVQR QVLEEILTRN ADVEYLRRHD LNGRTDRETF KNIMPVITYE DIEPEINRIA NGDKSPILSS
101: KPISEFLTSS GTSGGERKLM PTIEEELDRR SLLYSLLMPV MSQFVPGLEN GKGMYFLFIK SESKTPGGLP ARPVLTSYYK SSHFKERPYD PYTNYTSPNE
201: TILCSDSYQS MYSQMLCGLC QHQEVLRVGA VFASGFIRAI KFLEKHWIEL VRDIRTGTLS SLITDPSVRE AVAKILKPSP KLADFVEFEC KKSSWQGIIT
301: RLWPNTKYVD VIVTGTMSQY IPTLDYYSNG LPLVCTMYAS SECYFGVNLR PLCKPSEVSY TLIPSMAYFE FLPVHRNNGV TNSINLPKAL TEKEQQELVD
401: LVDVKLGQEY ELVVTTYAGL CRYRVGDLLR VTGFKNKAPQ FSFICRKNVV LSIDSDKTDE VELQNAVKNA VTHLVPFDAS LSEYTSYADT SSIPGHYVLF
501: WELCLDGNTP IPPSVFEDCC LAVEESFNTV YRQGRVSDKS IGPLEIKIVE PGTFDKLMDY AISLGASINQ YKTPRCVKFA PIIELLNSRV VDSYFSPKCP
601: KWVPGHKQWG SN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)