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AT5G44400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44390.1); Has 6440 Blast hits to 6338 proteins in 980 species: Archae - 110; Bacteria - 3349; Metazoa - 50; Fungi - 1662; Plants - 680; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44400-MONOMEReggNOG:COG0277eggNOG:ENOG410IE3MEMBL:AB011475
EMBL:AB017065EMBL:AY072198EMBL:CP002688EnsemblPlants:AT5G44400
EnsemblPlants:AT5G44400.1entrez:834466Gene3D:3.30.465.10GeneID:834466
GO:GO:0005618GO:GO:0009506GO:GO:0016614GO:GO:0050660
Gramene:AT5G44400.1hmmpanther:PTHR32448hmmpanther:PTHR32448:SF11HOGENOM:HOG000238933
InterPro:IPR006094InterPro:IPR012951InterPro:IPR016166InterPro:IPR016169
KEGG:ath:AT5G44400OMA:PESQIPFPfam:PF01565Pfam:PF08031
Pfscan:PS51387PhylomeDB:Q9FKU8PROSITE:PS51387Proteomes:UP000006548
RefSeq:NP_199253.1SMR:Q9FKU8STRING:3702.AT5G44400.1SUPFAM:SSF56176
TAIR:AT5G44400UniGene:At.30078UniProt:Q9FKU8
Coordinates (TAIR10) chr5:-:17886365..17888071
Molecular Weight (calculated) 60348.80 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.13
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MGISKPLPLF SILVLYFSLY TITPTSSLAS LQDQFINCVQ RNTHVYFPLE KTFFAPTKNV SMFSQVLEST AQNLRFLKKS MPKPGFIFSP IHESHVQASI
101: ICSKKLRMHL RVRSGGHDYE GLSYVSQIDK PFILMDLSKM RQVNINIQDN SAWVQSGATV GELYYRIAEK SKVHGFPAGL CSSLGIGGHI TGGAYGSMMR
201: KYGLGADNVL DAKIVDANGK LLDRAAMGED TFWAIRGGAG GSFGIILAWK IKLVPVPKTV TVFTVTKTLQ QDVGNKIISK WQRVADKLVE ELFIRVLFNV
301: AGTGGNKTVT TSYNALFLGG KGTLMNVMKK SFPELGLTFK DCIEMSWLES IAYISGFPTH TPTNVLLQGK SPFPKVSFKA KSDFVKTPIP ESGLQGIFKK
401: LLKEDIPLMI WNPYGGMMAK IPESQIPFPH RKGVLFKVQY VTSWLDSDKR PSRHINWIRD LYSYMTPYVS SNPREAYVNY RDLDLGRNTK DVKTCIKQAQ
501: VWGANYFKNN FNRLMMIKAK VDPENFFRHE QSIPPMM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)